Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   VO177_RS06975 Genome accession   NZ_CP141828
Coordinates   1367112..1368497 (+) Length   461 a.a.
NCBI ID   WP_103526593.1    Uniprot ID   -
Organism   Bacillus velezensis strain TZS01     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1362112..1373497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VO177_RS06955 (VO177_06955) - 1363259..1363906 (-) 648 WP_021494097.1 YigZ family protein -
  VO177_RS06960 (VO177_06960) degS 1364129..1365292 (+) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  VO177_RS06965 (VO177_06965) degU 1365369..1366058 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  VO177_RS06970 (VO177_06970) - 1366156..1367004 (+) 849 WP_003151387.1 DegV family protein -
  VO177_RS06975 (VO177_06975) comFA 1367112..1368497 (+) 1386 WP_103526593.1 DEAD/DEAH box helicase Machinery gene
  VO177_RS06980 (VO177_06980) - 1368555..1368839 (+) 285 WP_003151389.1 late competence development ComFB family protein -
  VO177_RS06985 (VO177_06985) comFC 1368845..1369534 (+) 690 WP_199449054.1 ComF family protein Machinery gene
  VO177_RS06990 (VO177_06990) - 1369608..1370027 (+) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  VO177_RS06995 (VO177_06995) flgM 1370097..1370363 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  VO177_RS07000 (VO177_07000) - 1370378..1370860 (+) 483 WP_003151394.1 flagellar protein FlgN -
  VO177_RS07005 (VO177_07005) flgK 1370876..1372393 (+) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  VO177_RS07010 (VO177_07010) flgL 1372405..1373322 (+) 918 WP_007407477.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52563.94 Da        Isoelectric Point: 10.2370

>NTDB_id=919951 VO177_RS06975 WP_103526593.1 1367112..1368497(+) (comFA) [Bacillus velezensis strain TZS01]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRIKRFTEKEYITAEPSIIRRKNRYVCQRCGQSDQASFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQTPENSWEPVKLSWEGTLTDGQKRAAAALTDAIKEGQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLNKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQLQLPVFLFVPSVHVLKKTTDYFRKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGITNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=919951 VO177_RS06975 WP_103526593.1 1367112..1368497(+) (comFA) [Bacillus velezensis strain TZS01]
ATGTCCGAGGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
CTCAGACCAGCGTATCAAGCGTTTTACAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCAGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAACCCCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGGGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCAGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTTTGTGTCGCAACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAATAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCGACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATTACAGCTGCCGGTTTTCTTATTCGTCCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCGGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGATTCAGAGACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATTACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(330-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.391

99.783

0.623