Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   VO177_RS06965 Genome accession   NZ_CP141828
Coordinates   1365369..1366058 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain TZS01     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1360369..1371058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VO177_RS06945 (VO177_06945) - 1360874..1361950 (+) 1077 WP_003151382.1 glycosyltransferase family 4 protein -
  VO177_RS06950 (VO177_06950) - 1362040..1363254 (-) 1215 WP_014419013.1 LCP family protein -
  VO177_RS06955 (VO177_06955) - 1363259..1363906 (-) 648 WP_021494097.1 YigZ family protein -
  VO177_RS06960 (VO177_06960) degS 1364129..1365292 (+) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  VO177_RS06965 (VO177_06965) degU 1365369..1366058 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  VO177_RS06970 (VO177_06970) - 1366156..1367004 (+) 849 WP_003151387.1 DegV family protein -
  VO177_RS06975 (VO177_06975) comFA 1367112..1368497 (+) 1386 WP_103526593.1 DEAD/DEAH box helicase Machinery gene
  VO177_RS06980 (VO177_06980) - 1368555..1368839 (+) 285 WP_003151389.1 late competence development ComFB family protein -
  VO177_RS06985 (VO177_06985) comFC 1368845..1369534 (+) 690 WP_199449054.1 ComF family protein Machinery gene
  VO177_RS06990 (VO177_06990) - 1369608..1370027 (+) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  VO177_RS06995 (VO177_06995) flgM 1370097..1370363 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  VO177_RS07000 (VO177_07000) - 1370378..1370860 (+) 483 WP_003151394.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=919950 VO177_RS06965 WP_003219701.1 1365369..1366058(+) (degU) [Bacillus velezensis strain TZS01]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=919950 VO177_RS06965 WP_003219701.1 1365369..1366058(+) (degU) [Bacillus velezensis strain TZS01]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCCGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCTGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1