Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   VO179_RS13220 Genome accession   NZ_CP141827
Coordinates   2768727..2769017 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain XHA14     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2763727..2774017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VO179_RS13180 (VO179_13180) darA 2763744..2764073 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  VO179_RS13185 (VO179_13185) - 2764086..2764526 (+) 441 WP_004264730.1 YaaR family protein -
  VO179_RS13190 (VO179_13190) holB 2764538..2765527 (+) 990 WP_031379324.1 DNA polymerase III subunit delta' -
  VO179_RS13195 (VO179_13195) ricT 2765530..2766357 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  VO179_RS13200 (VO179_13200) yabA 2766372..2766731 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  VO179_RS13205 (VO179_13205) - 2766792..2767535 (+) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  VO179_RS13210 (VO179_13210) - 2767522..2767821 (+) 300 WP_060675321.1 GIY-YIG nuclease family protein -
  VO179_RS13215 (VO179_13215) rsmI 2767796..2768677 (+) 882 WP_060675320.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  VO179_RS13220 (VO179_13220) abrB 2768727..2769017 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  VO179_RS13225 (VO179_13225) metG 2769501..2771492 (+) 1992 WP_020955208.1 methionine--tRNA ligase -
  VO179_RS13230 (VO179_13230) - 2771569..2772336 (+) 768 WP_053573817.1 TatD family hydrolase -
  VO179_RS13235 (VO179_13235) - 2772471..2773796 (+) 1326 WP_324636177.1 ubiquitin-like domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=919906 VO179_RS13220 WP_169510469.1 2768727..2769017(-) (abrB) [Bacillus velezensis strain XHA14]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=919906 VO179_RS13220 WP_169510469.1 2768727..2769017(-) (abrB) [Bacillus velezensis strain XHA14]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979