Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   VO180_RS17745 Genome accession   NZ_CP141826
Coordinates   3616953..3618101 (-) Length   382 a.a.
NCBI ID   WP_007410270.1    Uniprot ID   -
Organism   Bacillus velezensis strain XHA16     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3611953..3623101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VO180_RS17715 (VO180_17715) - 3612091..3612849 (-) 759 WP_003156330.1 ABC transporter ATP-binding protein -
  VO180_RS17720 (VO180_17720) - 3612843..3613790 (-) 948 WP_014416905.1 iron chelate uptake ABC transporter family permease subunit -
  VO180_RS17725 (VO180_17725) ceuB 3613780..3614733 (-) 954 WP_015239156.1 ABC transporter permease Machinery gene
  VO180_RS17730 (VO180_17730) - 3615147..3616511 (+) 1365 WP_199022338.1 aspartate kinase -
  VO180_RS17735 (VO180_17735) - 3616591..3616701 (+) 111 WP_369719092.1 YjcZ family sporulation protein -
  VO180_RS17740 (VO180_17740) phrC 3616850..3616969 (-) 120 WP_031378677.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  VO180_RS17745 (VO180_17745) rapC 3616953..3618101 (-) 1149 WP_007410270.1 Rap family tetratricopeptide repeat protein Regulator
  VO180_RS17750 (VO180_17750) - 3618254..3619687 (-) 1434 WP_324636132.1 HAMP domain-containing sensor histidine kinase -
  VO180_RS17755 (VO180_17755) - 3619674..3620357 (-) 684 WP_007410267.1 response regulator transcription factor -
  VO180_RS17760 (VO180_17760) - 3620570..3622006 (+) 1437 WP_228903603.1 ABC transporter permease -
  VO180_RS17765 (VO180_17765) - 3622021..3622704 (+) 684 WP_228903604.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 45475.70 Da        Isoelectric Point: 4.9916

>NTDB_id=919849 VO180_RS17745 WP_007410270.1 3616953..3618101(-) (rapC) [Bacillus velezensis strain XHA16]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDHMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=919849 VO180_RS17745 WP_007410270.1 3616953..3618101(-) (rapC) [Bacillus velezensis strain XHA16]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCATATGGAGCCTGATTCGAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGATTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTCGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAACA
ATCAGCGCGTGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAAATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAAGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(223-294)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

82.461

100

0.825
  rapF Bacillus subtilis subsp. subtilis str. 168

57.105

99.476

0.568