Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   VO180_RS02730 Genome accession   NZ_CP141826
Coordinates   543239..544624 (+) Length   461 a.a.
NCBI ID   WP_040238815.1    Uniprot ID   -
Organism   Bacillus velezensis strain XHA16     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 538239..549624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VO180_RS02710 (VO180_02710) - 539386..540033 (-) 648 WP_003151384.1 YigZ family protein -
  VO180_RS02715 (VO180_02715) degS 540256..541419 (+) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  VO180_RS02720 (VO180_02720) degU 541496..542185 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  VO180_RS02725 (VO180_02725) - 542283..543131 (+) 849 WP_015418336.1 DegV family protein -
  VO180_RS02730 (VO180_02730) comFA 543239..544624 (+) 1386 WP_040238815.1 DEAD/DEAH box helicase Machinery gene
  VO180_RS02735 (VO180_02735) - 544682..544966 (+) 285 WP_003151389.1 late competence development ComFB family protein -
  VO180_RS02740 (VO180_02740) comFC 544972..545661 (+) 690 WP_197093073.1 phosphoribosyltransferase family protein Machinery gene
  VO180_RS02745 (VO180_02745) - 545735..546154 (+) 420 WP_324636352.1 TIGR03826 family flagellar region protein -
  VO180_RS02750 (VO180_02750) flgM 546224..546490 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  VO180_RS02755 (VO180_02755) - 546505..546987 (+) 483 WP_003151394.1 flagellar protein FlgN -
  VO180_RS02760 (VO180_02760) flgK 547003..548520 (+) 1518 WP_025285351.1 flagellar hook-associated protein FlgK -
  VO180_RS02765 (VO180_02765) flgL 548532..549449 (+) 918 WP_007407477.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52515.94 Da        Isoelectric Point: 10.0818

>NTDB_id=919793 VO180_RS02730 WP_040238815.1 543239..544624(+) (comFA) [Bacillus velezensis strain XHA16]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRIKRFIEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWASSAKRQIT
YCRACVMMGRADELTSLYSWNQASENSWEPVKLSWEGTLTDGQKKAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
CQKLQSQLPVFLFVPSVDVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGMTNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=919793 VO180_RS02730 WP_040238815.1 543239..544624(+) (comFA) [Bacillus velezensis strain XHA16]
ATGTCCGAGGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCAGCGCATCAAGCGTTTTATAGAAAAAGAGTATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGTCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCTCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGAAGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTATGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGTCTGACTCCGTTAATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTT
TGCCAAAAACTTCAATCACAGCTGCCTGTTTTCTTATTCGTTCCGTCTGTAGACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACCGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATGACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(325-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

63.261

99.783

0.631