Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   VO180_RS02720 Genome accession   NZ_CP141826
Coordinates   541496..542185 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain XHA16     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 536496..547185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VO180_RS02700 (VO180_02700) - 536953..538029 (+) 1077 WP_003151382.1 glycosyltransferase family 4 protein -
  VO180_RS02705 (VO180_02705) - 538128..539381 (-) 1254 WP_324636351.1 LCP family protein -
  VO180_RS02710 (VO180_02710) - 539386..540033 (-) 648 WP_003151384.1 YigZ family protein -
  VO180_RS02715 (VO180_02715) degS 540256..541419 (+) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  VO180_RS02720 (VO180_02720) degU 541496..542185 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  VO180_RS02725 (VO180_02725) - 542283..543131 (+) 849 WP_015418336.1 DegV family protein -
  VO180_RS02730 (VO180_02730) comFA 543239..544624 (+) 1386 WP_040238815.1 DEAD/DEAH box helicase Machinery gene
  VO180_RS02735 (VO180_02735) - 544682..544966 (+) 285 WP_003151389.1 late competence development ComFB family protein -
  VO180_RS02740 (VO180_02740) comFC 544972..545661 (+) 690 WP_197093073.1 phosphoribosyltransferase family protein Machinery gene
  VO180_RS02745 (VO180_02745) - 545735..546154 (+) 420 WP_324636352.1 TIGR03826 family flagellar region protein -
  VO180_RS02750 (VO180_02750) flgM 546224..546490 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  VO180_RS02755 (VO180_02755) - 546505..546987 (+) 483 WP_003151394.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=919792 VO180_RS02720 WP_003219701.1 541496..542185(+) (degU) [Bacillus velezensis strain XHA16]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=919792 VO180_RS02720 WP_003219701.1 541496..542185(+) (degU) [Bacillus velezensis strain XHA16]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTACCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1