Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   VF946_RS09680 Genome accession   NZ_CP141824
Coordinates   1909943..1910437 (-) Length   164 a.a.
NCBI ID   WP_002942409.1    Uniprot ID   A0A075SLH4
Organism   Streptococcus suis strain HB18     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1904943..1915437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VF946_RS09665 - 1907671..1908615 (+) 945 WP_002939248.1 magnesium transporter CorA family protein -
  VF946_RS09670 - 1908631..1909287 (+) 657 WP_002939249.1 DUF1129 domain-containing protein -
  VF946_RS09675 rpsR 1909671..1909910 (-) 240 WP_002939250.1 30S ribosomal protein S18 -
  VF946_RS09680 ssbA 1909943..1910437 (-) 495 WP_002942409.1 single-stranded DNA-binding protein Machinery gene
  VF946_RS09685 rpsF 1910449..1910739 (-) 291 WP_002942403.1 30S ribosomal protein S6 -
  VF946_RS09690 - 1910911..1911900 (-) 990 WP_023371431.1 lipoate--protein ligase -
  VF946_RS09695 - 1912030..1913220 (+) 1191 WP_023371435.1 DUF6688 family protein -
  VF946_RS09700 lpdA 1913272..1915032 (-) 1761 WP_024383854.1 dihydrolipoyl dehydrogenase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18102.87 Da        Isoelectric Point: 4.7294

>NTDB_id=919773 VF946_RS09680 WP_002942409.1 1909943..1910437(-) (ssbA) [Streptococcus suis strain HB18]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINVVIWRQQAENLANWAKKGALIGVTGRIQTR
SYDNQQGQRVYVTEVVAESFQLLESRTAREGQGGGYSAGNSFAGGNDYNSPYQAPAQSTPNFAREESPFGASNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=919773 VF946_RS09680 WP_002942409.1 1909943..1910437(-) (ssbA) [Streptococcus suis strain HB18]
ATGATTAATAATGTAGTATTGGTTGGTCGTATGACCCGTGATGCAGAACTTCGTTATACTCCGTCTAATCAAGCTGTTGC
GACTTTTACTTTGGCGGTTAACCGCAATTTTAAAAATCAAAACGGTGAGCGTGAAGCGGACTTTATCAACGTAGTCATTT
GGCGTCAACAAGCTGAGAATTTGGCGAATTGGGCTAAGAAAGGTGCTCTGATTGGTGTTACAGGTCGTATTCAGACTCGT
AGCTATGACAATCAGCAAGGGCAACGTGTCTACGTTACTGAGGTAGTTGCAGAAAGTTTCCAACTCTTGGAAAGCCGTAC
TGCCCGTGAAGGTCAAGGTGGAGGCTATTCAGCTGGCAACTCGTTTGCTGGAGGAAATGACTATAACTCGCCTTATCAAG
CGCCTGCACAATCTACACCAAACTTCGCTCGAGAAGAAAGTCCATTTGGAGCAAGTAATCCAATGGATATATCAGACGAT
GACCTACCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A075SLH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.604
  ssb Latilactobacillus sakei subsp. sakei 23K

56.322

100

0.598
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.463

0.366