Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   VF946_RS08305 Genome accession   NZ_CP141824
Coordinates   1621833..1622837 (-) Length   334 a.a.
NCBI ID   WP_238717232.1    Uniprot ID   -
Organism   Streptococcus suis strain HB18     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1616833..1627837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VF946_RS08295 - 1618078..1619076 (-) 999 WP_014637671.1 glycosyltransferase family 4 protein -
  VF946_RS08300 - 1619387..1621399 (+) 2013 WP_329894436.1 Spy0128 family protein -
  VF946_RS08305 ccpA 1621833..1622837 (-) 1005 WP_238717232.1 catabolite control protein A Regulator
  VF946_RS08310 - 1623047..1624132 (+) 1086 WP_329894437.1 Xaa-Pro peptidase family protein -
  VF946_RS08315 tgt 1624171..1625313 (-) 1143 WP_074389729.1 tRNA guanosine(34) transglycosylase Tgt -
  VF946_RS08320 - 1625633..1626475 (+) 843 WP_012027317.1 DUF975 family protein -
  VF946_RS08325 - 1626770..1627207 (-) 438 WP_012027318.1 CoA-binding protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36772.94 Da        Isoelectric Point: 5.5140

>NTDB_id=919767 VF946_RS08305 WP_238717232.1 1621833..1622837(-) (ccpA) [Streptococcus suis strain HB18]
MLNTDDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANAYF
ATLAKGIDDIADMYKYNIVLANSDENDEKEINVVNTLFSKQVDGIIFMGYHLTDKIRAEFSRSRTPIVLAGTVDLDHQLP
SVNIDYAAASVDAVNLLAKNNKKIAFVSGPLVDDINGKVRFAGYKQGLKDNGIEFNEGLVFESKYKYEEGYALAERILNA
GATAAYVAEDEIAAGLLNGVSDMGIKVPEDFEIITSDDSLVTKFTRPNLTSINQPLYDIGAIAMRMLTKIMHKEELENRE
VVLNHGIKVRKSTK

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=919767 VF946_RS08305 WP_238717232.1 1621833..1622837(-) (ccpA) [Streptococcus suis strain HB18]
ATGTTAAACACTGACGATACGGTAACGATTTATGACGTTGCCCGCGAAGCAGGTGTATCCATGGCGACAGTATCGCGCGT
GGTAAATGGGAATAAAAACGTAAAGGAAAATACTCGTAAAAAAGTATTAGAAGTCATCGACCGCTTGGATTATCGTCCGA
ATGCTGTTGCACGTGGATTGGCCAGCAAGAAGACTACCACTGTGGGGGTTGTGATTCCAAATATTGCTAATGCTTATTTT
GCAACCTTGGCCAAAGGTATTGATGATATTGCCGATATGTACAAATACAATATCGTCCTAGCAAACAGTGATGAAAATGA
TGAGAAAGAAATCAATGTGGTAAATACCCTATTCTCAAAACAGGTGGACGGAATCATTTTCATGGGCTATCATTTGACAG
ACAAGATTCGTGCGGAGTTTTCACGCTCACGTACACCGATTGTTTTAGCTGGTACCGTGGACTTGGACCACCAATTACCT
AGCGTCAATATTGACTACGCTGCCGCTAGTGTTGATGCAGTCAATCTATTAGCTAAGAACAACAAGAAAATTGCCTTTGT
ATCAGGGCCGCTTGTAGATGACATCAACGGTAAAGTTCGTTTTGCAGGCTACAAACAAGGCTTGAAGGACAACGGAATCG
AGTTTAACGAAGGATTGGTTTTTGAATCCAAGTATAAATACGAGGAAGGCTACGCTCTAGCAGAACGTATTTTGAATGCC
GGAGCAACTGCAGCTTATGTTGCAGAAGATGAGATTGCTGCAGGTCTATTGAACGGTGTCAGTGATATGGGCATCAAGGT
TCCGGAAGATTTTGAAATCATCACAAGTGATGATTCCCTAGTGACTAAGTTTACCCGTCCAAACCTGACCTCTATCAATC
AGCCACTATATGATATTGGTGCAATTGCTATGCGCATGCTTACCAAAATCATGCACAAGGAAGAGTTGGAAAACCGTGAG
GTAGTTCTTAACCACGGAATCAAAGTACGTAAATCAACTAAGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(9-54)

Periplasmic binding protein-like domain (Peripla_BP_3)

(176-333)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

79.58

99.701

0.793
  ccpA Streptococcus gordonii str. Challis substr. CH1

78.979

99.701

0.787
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

59.215

99.102

0.587