Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   VF946_RS00765 Genome accession   NZ_CP141824
Coordinates   119324..120277 (+) Length   317 a.a.
NCBI ID   WP_024406069.1    Uniprot ID   -
Organism   Streptococcus suis strain HB18     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 114324..125277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VF946_RS00725 - 114594..115537 (-) 944 Protein_109 S66 peptidase family protein -
  VF946_RS00730 comYA 115623..116573 (+) 951 WP_011921718.1 competence type IV pilus ATPase ComGA Machinery gene
  VF946_RS00735 comYB 116485..117522 (+) 1038 WP_256770774.1 competence type IV pilus assembly protein ComGB Machinery gene
  VF946_RS00740 comYC 117524..117805 (+) 282 WP_011921720.1 competence type IV pilus major pilin ComGC Machinery gene
  VF946_RS00745 comGD 117786..118193 (+) 408 WP_011921721.1 competence type IV pilus minor pilin ComGD -
  VF946_RS00750 comYE 118165..118458 (+) 294 WP_011921722.1 competence type IV pilus minor pilin ComGE Machinery gene
  VF946_RS00755 comGF/cglF 118445..118879 (+) 435 WP_011922561.1 competence type IV pilus minor pilin ComGF Machinery gene
  VF946_RS00760 comGG 118857..119267 (+) 411 WP_011921724.1 competence type IV pilus minor pilin ComGG -
  VF946_RS00765 comYH 119324..120277 (+) 954 WP_024406069.1 class I SAM-dependent methyltransferase Machinery gene
  VF946_RS00770 - 120327..121514 (+) 1188 WP_012775473.1 acetate kinase -
  VF946_RS00775 - 121827..122378 (+) 552 WP_012775474.1 folate family ECF transporter S component -
  VF946_RS00780 - 122434..123690 (+) 1257 WP_012775475.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  VF946_RS00785 pepA 123735..124796 (-) 1062 WP_012775476.1 glutamyl aminopeptidase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35746.90 Da        Isoelectric Point: 4.5177

>NTDB_id=919742 VF946_RS00765 WP_024406069.1 119324..120277(+) (comYH) [Streptococcus suis strain HB18]
MNFEKIEQAYDLLLENVQTIQNQLGTNIYDAMIEQNATYVAGQHETDLVVKNNQTLKQLDLTKEEWRRAYQFLLIKANQT
EPMQYNHQFTPDSIGFILSFLVDQLVPTQKVTVLEIGSGTGNLAQTILNASQKELDYLGIEVDDLLIDLSASIADVMQAD
ISFAQGDAVRPQILKESQVILGDLPIGYYPDDQIASRYQVASPKEHTYAHHLLMEQSLKYLEKDGFAILLAPNDLLTSPQ
SDLLKGWLQEQANIVAMIALPPNLFGKAAMAKSIFVLQKKAARSLTPFVYPLQSLQEPEAIQKFMLNFKNWKQENAI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=919742 VF946_RS00765 WP_024406069.1 119324..120277(+) (comYH) [Streptococcus suis strain HB18]
ATGAATTTTGAAAAGATCGAACAGGCTTACGACCTGCTATTAGAAAACGTACAGACTATCCAAAACCAGCTAGGTACCAA
TATCTATGATGCCATGATTGAGCAAAATGCTACTTACGTAGCTGGTCAGCATGAGACGGATCTTGTTGTCAAAAACAATC
AGACCTTGAAACAACTAGATTTAACCAAGGAAGAATGGCGTCGTGCCTATCAATTCTTGCTCATCAAGGCCAATCAGACT
GAGCCCATGCAGTACAATCACCAGTTCACACCAGACTCTATCGGATTTATCCTATCTTTTCTAGTAGACCAATTGGTGCC
GACTCAAAAGGTGACGGTTCTGGAAATTGGTTCGGGGACAGGCAATCTAGCTCAGACCATTCTCAACGCCAGCCAGAAAG
AATTGGATTATTTGGGGATCGAAGTGGACGACCTCTTGATTGATTTGTCGGCAAGTATTGCGGATGTCATGCAGGCAGAT
ATTTCTTTTGCTCAGGGAGATGCGGTACGTCCGCAGATTTTGAAGGAAAGTCAAGTAATTCTGGGAGATTTGCCTATTGG
CTACTATCCAGATGACCAGATTGCTAGCCGTTATCAGGTCGCCAGTCCAAAGGAACATACCTACGCCCATCATTTACTCA
TGGAACAATCCCTGAAATATCTGGAAAAAGATGGCTTTGCGATTTTGTTGGCTCCAAATGATTTATTGACTAGTCCGCAA
AGCGATTTGCTGAAAGGTTGGTTACAGGAGCAAGCCAATATTGTTGCCATGATTGCCCTGCCACCAAATCTCTTTGGGAA
GGCTGCTATGGCCAAGTCTATTTTTGTCTTGCAAAAGAAAGCTGCAAGATCGTTGACGCCGTTTGTTTATCCCTTGCAAA
GTCTTCAAGAACCAGAAGCTATTCAGAAGTTCATGCTCAATTTCAAAAATTGGAAGCAAGAGAATGCAATTTAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(68-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

60.443

99.685

0.603
  comYH Streptococcus mutans UA159

60.127

99.685

0.599