Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   VCJ09_RS09905 Genome accession   NZ_CP141799
Coordinates   2133412..2135625 (+) Length   737 a.a.
NCBI ID   WP_324734640.1    Uniprot ID   -
Organism   Pseudomonas paeninsulae strain IT1137     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2128412..2140625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VCJ09_RS09875 - 2128427..2128732 (-) 306 WP_324734161.1 phosphodiesterase -
  VCJ09_RS09880 - 2128743..2129324 (-) 582 WP_324734162.1 PilZ domain-containing protein -
  VCJ09_RS09885 - 2129420..2130670 (+) 1251 WP_324734163.1 lipoprotein-releasing ABC transporter permease subunit -
  VCJ09_RS09890 lolD 2130678..2131361 (+) 684 WP_324734639.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  VCJ09_RS09895 - 2131361..2132605 (+) 1245 WP_324734164.1 lipoprotein-releasing ABC transporter permease subunit -
  VCJ09_RS09900 - 2132726..2133259 (-) 534 WP_324734165.1 DUF2062 domain-containing protein -
  VCJ09_RS09905 comA 2133412..2135625 (+) 2214 WP_324734640.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  VCJ09_RS09910 exbB 2135698..2136330 (+) 633 WP_324734166.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  VCJ09_RS09915 - 2136327..2136755 (+) 429 WP_324734167.1 biopolymer transporter ExbD -
  VCJ09_RS09920 lpxK 2136769..2137773 (+) 1005 WP_324734168.1 tetraacyldisaccharide 4'-kinase -
  VCJ09_RS09925 - 2137836..2138021 (+) 186 WP_079201660.1 Trm112 family protein -
  VCJ09_RS09930 kdsB 2138022..2138786 (+) 765 WP_324734169.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  VCJ09_RS09935 - 2138786..2139250 (+) 465 WP_324734170.1 low molecular weight protein-tyrosine-phosphatase -
  VCJ09_RS09940 murB 2139247..2140266 (+) 1020 WP_324734171.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 80225.35 Da        Isoelectric Point: 9.5639

>NTDB_id=919547 VCJ09_RS09905 WP_324734640.1 2133412..2135625(+) (comA) [Pseudomonas paeninsulae strain IT1137]
MTALVAGLLLLRLLPILPPVWLLWLLPILGLMLLPFRSYPLAFFLFGLSWAGISAQSALDDRLAPELDGRTLWLQGRVVG
LPDVRDGVVRFQLQQAKSRRAELPQRLRLAWHGGPELRGGETWRLAVRLKRPHGLVNPQSFDYEAWLLAQRIGATGTVKS
GQLVSAASGLGSWRDGLRQRLLSVDAHGREGALAALVLGDGSGLSVADWRVLQDTGTVHLLVISGQHVGLLAGLLYGLIA
GLARLGWWPRQWPWLPCACVLAFAGALGYGMLAGFEVPVRRACVMVGLVLLWRWRFRHLGVFLPLLLALVVVLLLEPLAS
LQPGLWLSFGAVLLLILIFSGRLGAWSWWQTLGRAQWAMAIGLLPLLLALGLPVSASGPLANLIAVPWVGLAVVPLALLG
TLLLPLPWLGEALLWLAGGLLKLLFLVLAQMATWLPAWLPETLPLWAWLLVALGALLLLLPAGVPLRSLGWVLLLPLFYT
ETERPVHGQAEVWMLDVGQGLAVLLRTREHALLYDAGPRFGDFDMGERVVLPSLRGLGVAQLDMLLISHADNDHSGGALA
IQRGMAVKQVVSGEAAALPGMHQVEACEAGRSWQWDGVRFTTWRWAGAVDGNQASCVLLIEAAGERLLLTGDIDSSAERA
LLDSGFDVRADWLLAPHHGSRSSSSQLFLEAVAAQAALISRGRHNAFGHPHASVVARYEAQSAQLYDTVEYGAVQIRLGA
FTHGRGLRERARFWREK

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=919547 VCJ09_RS09905 WP_324734640.1 2133412..2135625(+) (comA) [Pseudomonas paeninsulae strain IT1137]
ATGACTGCGCTGGTGGCCGGGTTGCTGCTGCTGCGATTATTGCCGATTTTGCCACCGGTCTGGTTGTTATGGCTGCTGCC
GATCCTGGGGCTGATGTTGCTGCCCTTTCGCAGCTATCCGCTGGCGTTTTTCCTGTTTGGCCTCAGTTGGGCCGGCATCT
CGGCGCAGTCGGCCTTGGACGACAGGCTGGCGCCGGAGCTCGATGGCCGTACCCTGTGGCTGCAGGGAAGGGTGGTCGGC
CTGCCCGATGTGCGCGATGGCGTCGTCAGGTTTCAATTGCAACAAGCCAAGTCGCGGCGTGCCGAGTTGCCGCAGCGACT
GCGCTTGGCCTGGCATGGCGGCCCAGAGCTGCGAGGCGGCGAGACCTGGCGTCTGGCTGTGCGCCTCAAGCGGCCACATG
GCCTGGTCAACCCGCAGTCTTTCGATTACGAGGCCTGGCTGCTGGCGCAACGCATTGGCGCGACCGGCACGGTCAAGAGT
GGCCAGTTGGTGAGCGCCGCCAGCGGGCTTGGTAGCTGGCGCGATGGGTTGCGCCAGCGCTTGCTCTCAGTCGATGCCCA
TGGTCGCGAGGGAGCGCTGGCGGCCCTGGTGCTGGGTGATGGCTCTGGCTTGTCGGTGGCCGATTGGCGCGTGCTGCAAG
ACACCGGCACGGTGCATTTGCTGGTGATTTCCGGTCAGCATGTCGGGCTGCTGGCCGGGCTGTTGTATGGCTTGATTGCC
GGGTTGGCGCGTTTGGGCTGGTGGCCACGCCAATGGCCGTGGTTGCCCTGTGCTTGTGTCCTGGCCTTCGCCGGTGCGCT
CGGCTACGGCATGCTGGCCGGCTTCGAGGTGCCGGTGCGGCGTGCTTGTGTGATGGTCGGCCTGGTGCTGCTGTGGCGTT
GGCGCTTTCGTCATCTTGGGGTTTTCTTGCCGTTGTTGCTGGCGTTGGTCGTGGTCTTGCTGCTGGAGCCCCTGGCCAGC
CTGCAACCGGGTCTCTGGCTATCCTTCGGCGCGGTGCTGTTGCTGATCCTGATTTTCAGCGGCCGGCTGGGCGCATGGTC
GTGGTGGCAGACGCTGGGGCGGGCGCAGTGGGCGATGGCCATAGGTCTGCTGCCGCTGTTGCTGGCGTTGGGGTTGCCGG
TCAGTGCCAGTGGTCCGCTGGCCAATCTAATAGCCGTGCCCTGGGTCGGCCTGGCTGTGGTGCCGTTGGCATTGTTGGGT
ACCTTGCTGTTGCCGCTGCCCTGGCTGGGCGAGGCGCTGCTATGGCTCGCTGGTGGTTTGCTCAAGCTGCTGTTCCTGGT
ATTGGCGCAGATGGCCACCTGGTTACCGGCCTGGTTGCCCGAGACATTACCGCTCTGGGCCTGGCTGCTGGTGGCGCTGG
GCGCTTTGCTGTTGCTCCTGCCGGCCGGTGTGCCATTGCGCAGCCTGGGCTGGGTTTTACTGCTGCCACTGTTCTACACC
GAGACTGAGCGACCGGTCCACGGTCAGGCCGAGGTGTGGATGCTGGACGTTGGTCAAGGCTTGGCGGTCTTGCTGCGCAC
CCGCGAACATGCGCTGTTGTATGACGCCGGTCCGCGTTTCGGCGACTTCGATATGGGCGAGCGTGTGGTGCTGCCGTCGC
TGCGCGGCCTGGGGGTGGCTCAACTGGATATGTTGCTGATCAGCCATGCCGATAACGATCATTCCGGCGGTGCACTGGCG
ATTCAGCGCGGGATGGCGGTCAAGCAGGTGGTGAGCGGCGAGGCCGCAGCGCTGCCCGGGATGCATCAGGTCGAGGCCTG
TGAGGCGGGGCGCAGCTGGCAGTGGGATGGGGTGCGTTTCACGACCTGGCGTTGGGCAGGGGCAGTGGATGGCAATCAAG
CCTCTTGCGTATTGCTGATCGAGGCGGCTGGCGAGCGACTGTTATTGACCGGCGATATCGACAGTAGTGCCGAGCGCGCG
TTGCTCGACAGTGGCTTTGACGTTCGTGCGGACTGGCTGTTGGCCCCACACCATGGCAGCCGCAGCTCATCCTCGCAGCT
CTTTTTAGAGGCTGTGGCGGCGCAGGCGGCACTGATTTCCCGTGGCCGGCACAACGCATTCGGTCATCCGCATGCCAGTG
TGGTGGCGCGTTACGAGGCGCAGTCCGCGCAACTGTATGACACGGTCGAGTACGGGGCCGTGCAGATTCGTCTTGGCGCT
TTTACCCACGGGCGAGGGTTACGCGAGCGCGCACGATTTTGGCGAGAAAAATGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(196-461)

Metallo-beta-lactamase superfamily (Lactamase_B)

(496-680)

Domain of unknown function (DUF4131) (DUF4131)

(18-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

68.48

97.286

0.666
  comA Ralstonia pseudosolanacearum GMI1000

34.279

100

0.393