Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   VCJ09_RS09910 Genome accession   NZ_CP141799
Coordinates   2135698..2136330 (+) Length   210 a.a.
NCBI ID   WP_324734166.1    Uniprot ID   -
Organism   Pseudomonas paeninsulae strain IT1137     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2130698..2141330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VCJ09_RS09895 - 2131361..2132605 (+) 1245 WP_324734164.1 lipoprotein-releasing ABC transporter permease subunit -
  VCJ09_RS09900 - 2132726..2133259 (-) 534 WP_324734165.1 DUF2062 domain-containing protein -
  VCJ09_RS09905 comA 2133412..2135625 (+) 2214 WP_324734640.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  VCJ09_RS09910 exbB 2135698..2136330 (+) 633 WP_324734166.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  VCJ09_RS09915 - 2136327..2136755 (+) 429 WP_324734167.1 biopolymer transporter ExbD -
  VCJ09_RS09920 lpxK 2136769..2137773 (+) 1005 WP_324734168.1 tetraacyldisaccharide 4'-kinase -
  VCJ09_RS09925 - 2137836..2138021 (+) 186 WP_079201660.1 Trm112 family protein -
  VCJ09_RS09930 kdsB 2138022..2138786 (+) 765 WP_324734169.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  VCJ09_RS09935 - 2138786..2139250 (+) 465 WP_324734170.1 low molecular weight protein-tyrosine-phosphatase -
  VCJ09_RS09940 murB 2139247..2140266 (+) 1020 WP_324734171.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22851.10 Da        Isoelectric Point: 9.1324

>NTDB_id=919548 VCJ09_RS09910 WP_324734166.1 2135698..2136330(+) (exbB) [Pseudomonas paeninsulae strain IT1137]
MWELVKAGGWMMLPIMLCSIAAAGIIAERLWTLRPSRITPPHLLGQVWRWIKDKKLNNQKLKELRANSPLGQILAAGLAN
SKHGREIMKECIQEAAARVIHDLERYLNALGTIAGIAPLLGLLGTVLGMIEIFSSFMGSGMANAALLAAGISTALITTAA
GLMVAIPALFFHRYLQRRVDELVVGMEQEAIKLVEVVQGDRDVDFAEGKA

Nucleotide


Download         Length: 633 bp        

>NTDB_id=919548 VCJ09_RS09910 WP_324734166.1 2135698..2136330(+) (exbB) [Pseudomonas paeninsulae strain IT1137]
GTGTGGGAACTGGTTAAAGCTGGCGGCTGGATGATGCTGCCCATAATGCTGTGCTCTATTGCTGCGGCCGGCATTATTGC
CGAGCGTCTGTGGACGCTGCGGCCCAGCCGCATCACCCCGCCACACCTGCTCGGTCAGGTATGGCGGTGGATCAAGGATA
AAAAGCTGAATAACCAGAAGCTCAAGGAACTGCGTGCCAACTCGCCCTTGGGTCAGATTCTGGCTGCCGGCCTGGCCAAT
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCCAAGAGGCCGCCGCGCGGGTTATCCACGATCTGGAGCGCTATCT
CAATGCCCTGGGCACCATCGCCGGTATCGCGCCGCTGCTCGGTTTGCTCGGTACCGTGTTGGGTATGATCGAAATTTTCA
GCTCCTTCATGGGCTCGGGTATGGCCAATGCGGCGCTGCTCGCAGCAGGTATTTCCACGGCATTGATCACCACAGCGGCC
GGGTTGATGGTAGCCATTCCAGCCTTGTTCTTTCACCGCTATTTGCAACGCCGAGTCGATGAGTTGGTGGTCGGCATGGA
GCAGGAGGCGATCAAGCTGGTGGAAGTAGTGCAAGGTGATCGTGACGTCGATTTTGCTGAGGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

89.524

100

0.895