Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   VA943_RS00040 Genome accession   NZ_CP141798
Coordinates   9220..9738 (+) Length   172 a.a.
NCBI ID   WP_101891008.1    Uniprot ID   -
Organism   Lactobacillus paragasseri strain SYP-B4209     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4220..14738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VA943_RS00025 (VA943_00025) gyrB 4236..6203 (+) 1968 WP_003649730.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  VA943_RS00030 (VA943_00030) gyrA 6214..8703 (+) 2490 WP_003649729.1 DNA gyrase subunit A -
  VA943_RS00035 (VA943_00035) rpsF 8890..9186 (+) 297 WP_003648136.1 30S ribosomal protein S6 -
  VA943_RS00040 (VA943_00040) ssb 9220..9738 (+) 519 WP_101891008.1 single-stranded DNA-binding protein Machinery gene
  VA943_RS00045 (VA943_00045) rpsR 9763..9999 (+) 237 WP_003649728.1 30S ribosomal protein S18 -
  VA943_RS00050 (VA943_00050) - 10094..11011 (+) 918 WP_101891007.1 magnesium transporter CorA family protein -
  VA943_RS00055 (VA943_00055) - 11117..13135 (+) 2019 WP_077959281.1 DHH family phosphoesterase -
  VA943_RS00060 (VA943_00060) rplI 13147..13602 (+) 456 WP_077959282.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18472.13 Da        Isoelectric Point: 4.7531

>NTDB_id=919523 VA943_RS00040 WP_101891008.1 9220..9738(+) (ssb) [Lactobacillus paragasseri strain SYP-B4209]
MINNVVLVGRLTRDPDLRTTGSGISVATFTLAVDRQYTNSQGERGADFVSCVIWRKAAENFANFTSKGSLVGIQGRIQTR
TYDDKDGKRVYVTEVIVDSFSLLESRRDRENRQTNGGNFAPQGGNAPSTNNFGGSSAPSTNNAPAGGESNKPQDPFADSG
STIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=919523 VA943_RS00040 WP_101891008.1 9220..9738(+) (ssb) [Lactobacillus paragasseri strain SYP-B4209]
ATGATTAATAATGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGATTTACGTACAACCGGGAGTGGAATCTCAGTTGC
TACGTTTACTCTAGCTGTTGACCGTCAATACACCAATAGTCAAGGTGAACGTGGTGCTGATTTCGTCAGCTGTGTAATTT
GGCGTAAAGCCGCAGAGAATTTTGCTAACTTTACTTCAAAGGGTTCACTAGTTGGTATTCAAGGTCGGATTCAAACTAGA
ACGTATGATGATAAAGATGGTAAGAGAGTCTACGTGACTGAAGTCATCGTTGATAGTTTCTCTTTATTAGAATCACGTCG
TGACCGTGAGAATCGTCAGACTAATGGTGGTAATTTTGCTCCGCAAGGAGGAAATGCTCCAAGTACCAATAACTTTGGTG
GATCAAGTGCACCAAGCACTAATAATGCTCCTGCTGGTGGAGAAAGCAATAAACCGCAGGATCCATTTGCAGATTCAGGT
AGCACTATTGATATTTCGGATGATGATCTCCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.92

100

0.616
  ssbA Bacillus subtilis subsp. subtilis str. 168

50

100

0.512
  ssb Glaesserella parasuis strain SC1401

33.69

100

0.366