Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   OCV36_RS01305 Genome accession   NZ_AP025483
Coordinates   293841..294473 (-) Length   210 a.a.
NCBI ID   WP_004729651.1    Uniprot ID   A0AAN0LME0
Organism   Vibrio echinoideorum strain DSM 107264     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 288841..299473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV36_RS01290 astA 290099..291118 (+) 1020 WP_029224872.1 arginine N-succinyltransferase -
  OCV36_RS01295 astD 291158..292615 (+) 1458 WP_135457733.1 succinylglutamate-semialdehyde dehydrogenase -
  OCV36_RS01300 - 292873..293664 (+) 792 WP_135457735.1 DUF1338 domain-containing protein -
  OCV36_RS01305 crp 293841..294473 (-) 633 WP_004729651.1 cAMP-activated global transcriptional regulator CRP Regulator
  OCV36_RS01310 - 294713..295582 (-) 870 WP_004729650.1 phosphoribulokinase -
  OCV36_RS01315 - 295660..295872 (-) 213 WP_004729649.1 YheU family protein -
  OCV36_RS01320 - 295988..296995 (-) 1008 WP_135457737.1 hydrolase -
  OCV36_RS01325 - 297276..297746 (-) 471 WP_017073690.1 TIGR02444 family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23623.39 Da        Isoelectric Point: 7.4009

>NTDB_id=91952 OCV36_RS01305 WP_004729651.1 293841..294473(-) (crp) [Vibrio echinoideorum strain DSM 107264]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMANRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=91952 OCV36_RS01305 WP_004729651.1 293841..294473(-) (crp) [Vibrio echinoideorum strain DSM 107264]
ATGGTTCTAGGTAAACCCCAAACCGATCCAACATTAGAGTGGTTCCTTTCACACTGTCATATTCATAAGTACCCATCAAA
AAGTACTTTGATTCATGCTGGTGAAAAGGCAGAAACCTTGTACTACATCGTTAAAGGTTCTGTGGCAGTTCTTATCAAAG
ACGAAGAAGGTAAGGAAATGATTCTTTCTTACCTAAACCAAGGTGACTTCATTGGTGAACTTGGCCTCTTCGAAGAAGAC
CAAGAGCGTACTGCATGGGTTCGTGCAAAATCTCCTTGTGAAGTAGCTGAAATTTCTTTCAAGAAATTCCGTCAACTTAT
CCAGGTGAACCCAGATATCCTTATGCGTCTTTCAGCGCAAATGGCAAACCGTCTACAAGTGACTAGCCAAAAGGTTGGTG
ACTTAGCGTTCCTTGACGTAACAGGTCGTATCGCTCAAACGCTACTAAACCTAGCGAAACAGCCAGATGCAATGACTCAC
CCTGACGGCATGCAAATCAAGATCACTCGTCAAGAGATTGGCCAAATTGTTGGTTGTTCTCGTGAAACAGTAGGTCGTAT
CTTGAAGATGCTTGAAGAGCAGAACTTAATTTCTGCACACGGTAAAACTATCGTGGTATACGGCACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment