Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   AB2M34_RS08745 Genome accession   NZ_CP161903
Coordinates   1648288..1648905 (+) Length   205 a.a.
NCBI ID   WP_046160608.1    Uniprot ID   -
Organism   Bacillus subtilis strain DYJ24     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1643288..1653905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2M34_RS08710 (AB2M34_08710) aroE 1643946..1644788 (+) 843 WP_029317883.1 shikimate dehydrogenase -
  AB2M34_RS08715 (AB2M34_08715) yhbY 1644782..1645072 (+) 291 WP_003226133.1 ribosome assembly RNA-binding protein YhbY -
  AB2M34_RS08720 (AB2M34_08720) nadD 1645084..1645653 (+) 570 WP_041333756.1 nicotinate-nucleotide adenylyltransferase -
  AB2M34_RS08725 (AB2M34_08725) yqeK 1645643..1646203 (+) 561 WP_014480316.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  AB2M34_RS08730 (AB2M34_08730) rsfS 1646221..1646577 (+) 357 WP_014480315.1 ribosome silencing factor -
  AB2M34_RS08735 (AB2M34_08735) yqeM 1646574..1647317 (+) 744 WP_046160609.1 class I SAM-dependent methyltransferase -
  AB2M34_RS08740 (AB2M34_08740) comER 1647383..1648204 (-) 822 WP_032726195.1 late competence protein ComER -
  AB2M34_RS08745 (AB2M34_08745) comEA 1648288..1648905 (+) 618 WP_046160608.1 competence protein ComEA Machinery gene
  AB2M34_RS08750 (AB2M34_08750) comEB 1648972..1649541 (+) 570 WP_003229978.1 ComE operon protein 2 -
  AB2M34_RS08755 (AB2M34_08755) comEC 1649545..1651875 (+) 2331 WP_046160607.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AB2M34_RS08760 (AB2M34_08760) yqzM 1651916..1652050 (-) 135 WP_003229983.1 YqzM family protein -
  AB2M34_RS08765 (AB2M34_08765) - 1652127..1652240 (+) 114 WP_122060479.1 hypothetical protein -
  AB2M34_RS08770 (AB2M34_08770) holA 1652280..1653323 (+) 1044 WP_029317888.1 DNA polymerase III subunit delta -
  AB2M34_RS08775 (AB2M34_08775) rpsT 1653338..1653604 (-) 267 WP_003229989.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 21738.48 Da        Isoelectric Point: 4.7284

>NTDB_id=919484 AB2M34_RS08745 WP_046160608.1 1648288..1648905(+) (comEA) [Bacillus subtilis strain DYJ24]
MNWLNQHKKAIVLAASAAVFTAIMIFLATGKNKEPVKQAVPTEAENTVVKQEANNDESSETIVIDIKGAVQHPGVYEMRT
GDRVSQAIEKAGGTSEQADEAQVNLAEILQDGTVVYIPKKGEETAVQQGGGGSVQSDGGKGALVNINTATLEELQGISGV
GPSKAEAIIAYREENGRFQTIEEITKVSGIGEKLFEKIKSSITVK

Nucleotide


Download         Length: 618 bp        

>NTDB_id=919484 AB2M34_RS08745 WP_046160608.1 1648288..1648905(+) (comEA) [Bacillus subtilis strain DYJ24]
ATGAATTGGTTGAATCAGCATAAGAAAGCAATTGTTTTAGCGGCTTCTGCGGCTGTTTTCACAGCGATTATGATCTTTCT
GGCCACAGGGAAAAATAAAGAGCCGGTGAAGCAAGCTGTACCAACAGAGGCAGAAAATACAGTGGTAAAGCAGGAAGCAA
ACAACGACGAGTCAAGCGAAACAATTGTGATAGACATCAAAGGTGCTGTTCAGCATCCTGGAGTTTATGAAATGCGAACA
GGGGACAGAGTATCTCAGGCAATTGAGAAAGCGGGCGGGACCAGTGAACAAGCAGACGAAGCGCAAGTAAATTTGGCGGA
GATTTTGCAGGACGGGACAGTGGTGTACATCCCGAAAAAGGGAGAGGAAACAGCAGTGCAGCAAGGTGGCGGAGGGTCTG
TCCAAAGCGATGGAGGGAAGGGAGCGCTGGTGAATATCAATACAGCAACCTTAGAGGAGTTACAAGGCATCTCAGGGGTG
GGGCCATCCAAAGCTGAAGCTATTATTGCATACCGGGAAGAAAACGGGCGTTTCCAAACAATTGAAGAAATCACTAAGGT
TTCAGGAATAGGTGAAAAGTTATTTGAGAAAATAAAGTCTTCCATTACAGTAAAGTGA

Domains

Predicted by InterProScan.

SLBB domain (SLBB)

(63-118)

Helix-hairpin-helix motif (HHH_3)

(142-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

97.561

100

0.976
  comEA Staphylococcus aureus MW2

35.909

100

0.385
  comEA Staphylococcus aureus N315

35

100

0.376