Detailed information NTG0919476

Bioinformatically predicted

Overview

• Name: ruvA
• Type: Machinery gene
• Locus tag: AB2M34_RS07890
• Genome accession: NZ_CP161903
• Coordinates: 1498480..1499085 (+)
• Length: 201 a.a.
• NCBI ID: WP_003229717.1
• Uniprot ID: O05392
• Organism: Bacillus subtilis strain DYJ24
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1493480..1504085

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB2M34_RS07850 (AB2M34_07850)	-	1493647..1493787 (-)	141	WP_004398683.1	hypothetical protein	-
AB2M34_RS07855 (AB2M34_07855)	-	1493794..1494162 (-)	369	WP_186437837.1	DUF5412 family protein	-
AB2M34_RS07860 (AB2M34_07860)	-	1494166..1494240 (-)	75	Protein_1538	hypothetical protein	-
AB2M34_RS07865 (AB2M34_07865)	-	1494325..1494447 (+)	123	WP_003229707.1	hypothetical protein	-
AB2M34_RS07870 (AB2M34_07870)	yrzF	1494493..1495140 (-)	648	WP_014480441.1	phosphotransferase	-
AB2M34_RS07875 (AB2M34_07875)	iolG	1495378..1496403 (+)	1026	WP_014480440.1	inositol 2-dehydrogenase	-
AB2M34_RS07880 (AB2M34_07880)	csbX	1496474..1497781 (+)	1308	WP_014480439.1	MFS transporter	-
AB2M34_RS07885 (AB2M34_07885)	bofC	1497829..1498341 (+)	513	WP_014480438.1	sporulation cell-cell signaling protein BofC	-
AB2M34_RS07890 (AB2M34_07890)	ruvA	1498480..1499085 (+)	606	WP_003229717.1	Holliday junction branch migration protein RuvA	Machinery gene
AB2M34_RS07895 (AB2M34_07895)	ruvB	1499096..1500100 (+)	1005	WP_003229718.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
AB2M34_RS07900 (AB2M34_07900)	yrzS	1500093..1500293 (+)	201	WP_003222669.1	DUF2905 domain-containing protein	-
AB2M34_RS07905 (AB2M34_07905)	queA	1500323..1501351 (+)	1029	WP_003229723.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
AB2M34_RS07910 (AB2M34_07910)	tgt	1501378..1502523 (+)	1146	WP_003229725.1	tRNA guanosine(34) transglycosylase Tgt	-
AB2M34_RS07915 (AB2M34_07915)	yajC	1502560..1502826 (+)	267	WP_004398708.1	preprotein translocase subunit YajC	-
AB2M34_RS07920 (AB2M34_07920)	-	1502883..1503272 (-)	390	WP_014477528.1	TIGR04086 family membrane protein	-

Sequence

Protein

• Length: 201 a.a.
• Molecular weight: 22584.08 Da
• Isoelectric Point: 5.4072

>NTDB_id=919476 AB2M34_RS07890 WP_003229717.1 1498480..1499085(+) (ruvA) [Bacillus subtilis strain DYJ24]
MIEFVKGTIDYVSPQYIVIENGGIGYQIFTPNPFIYKERSQETIFTYHHIREDAFSLYGFSTREEKALFTKLLNVTGIGP
KGALAILGSGDPGAVIQAIENEDEAFLVKFPGVGKKTARQIILDLKGKLADVVPEMIENLFNHEERLEKQTAETALEEAL
EALRVLGYAEKEIKKVLPHLKEEIGLTTDQYVKKALQKLLK

Nucleotide

• Length: 606 bp

>NTDB_id=919476 AB2M34_RS07890 WP_003229717.1 1498480..1499085(+) (ruvA) [Bacillus subtilis strain DYJ24]
GTGATTGAATTTGTTAAAGGGACGATTGATTATGTATCTCCCCAATATATTGTCATAGAGAACGGCGGCATCGGCTATCA
GATTTTCACGCCGAATCCGTTTATATATAAGGAGAGAAGCCAGGAAACGATTTTTACATACCATCATATCAGAGAGGATG
CTTTTTCGCTTTACGGTTTTTCAACAAGAGAGGAGAAGGCGCTCTTTACAAAGCTGTTAAACGTGACCGGAATTGGCCCG
AAAGGAGCACTTGCCATCTTGGGCTCGGGTGATCCCGGAGCGGTCATCCAAGCAATTGAAAATGAAGATGAAGCTTTTTT
GGTCAAGTTTCCTGGAGTAGGAAAGAAAACCGCACGCCAGATTATTCTAGATTTAAAAGGAAAGCTGGCAGATGTTGTGC
CTGAAATGATTGAAAATCTGTTTAATCATGAAGAAAGGCTTGAAAAGCAAACAGCGGAAACGGCTCTTGAAGAAGCACTT
GAAGCCCTCAGGGTTCTCGGATATGCTGAAAAAGAAATCAAAAAGGTGCTTCCTCACCTTAAAGAAGAAATTGGGCTGAC
AACAGACCAATATGTGAAAAAAGCATTACAAAAACTATTAAAGTAA

Domains

Predicted by InterProScan.

• RuvA, C-terminal domain (RuvA_C) (155-199)

• RuvA N terminal domain (RuvA_N) (1-59)

• Helix-hairpin-helix domain (HHH_5) (69-126)

3D structure

• AlphaFold DB: O05392

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvA	Bacillus subtilis subsp. subtilis str. 168	100	100	1
ruvA	Streptococcus pneumoniae TIGR4	39.806	100	0.408
ruvA	Streptococcus pneumoniae R6	39.806	100	0.408
ruvA	Streptococcus pneumoniae D39	39.806	100	0.408