NTDB

Overview

Name	dprA	Type	Machinery gene
Locus tag	VA211_RS05600	Genome accession	NZ_CP141771
Coordinates	1156736..1157536 (-)	Length	266 a.a.
NCBI ID	WP_324684589.1	Uniprot ID	-
Organism	Helicobacter pylori strain P08204
Function	ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing

Genomic Context

Location: 1151736..1162536

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VA211_RS05560	-	1152590..1153375 (-)	786	WP_324684575.1	hypothetical protein	-
VA211_RS05565	-	1153375..1153761 (-)	387	WP_324684577.1	DUF1294 domain-containing protein	-
VA211_RS05570	-	1154088..1154249 (-)	162	WP_324684579.1	lysozyme	-
VA211_RS05575	-	1154269..1154763 (-)	495	WP_324684581.1	glycoside hydrolase family protein	-
VA211_RS05580	-	1154774..1155334 (-)	561	WP_324684583.1	hypothetical protein	-
VA211_RS05585	-	1155318..1155656 (-)	339	WP_000699911.1	hypothetical protein	-
VA211_RS05590	-	1155844..1156167 (-)	324	WP_324684585.1	tetratricopeptide repeat protein	-
VA211_RS05595	dprB	1156335..1156739 (-)	405	WP_324684587.1	Holliday junction resolvase RuvX	Machinery gene
VA211_RS05600	dprA	1156736..1157536 (-)	801	WP_324684589.1	DNA-processing protein DprA	Machinery gene
VA211_RS05605	minE	1157543..1157776 (-)	234	WP_000051412.1	cell division topological specificity factor MinE	-
VA211_RS05610	minD	1157773..1158579 (-)	807	WP_324684592.1	septum site-determining protein MinD	-
VA211_RS05615	ilvC	1158604..1159596 (-)	993	WP_324684594.1	ketol-acid reductoisomerase	-
VA211_RS05625	-	1159845..1160627 (+)	783	WP_212853447.1	NAD+ synthase	-
VA211_RS05630	-	1160624..1161562 (+)	939	WP_324684597.1	tetraacyldisaccharide 4'-kinase	-
VA211_RS05635	pseH	1161495..1162037 (-)	543	WP_324684599.1	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase	-

Sequence

Protein

Download Length: 266 a.a. Molecular weight: 29896.84 Da Isoelectric Point: 8.7867

                                >NTDB_id=919369 VA211_RS05600 WP_324684589.1 1156736..1157536(-) (dprA) [Helicobacter pylori strain P08204]

MKSNFQYSTLENIPKAFDILKDPPKKLYCVGDTKLLEAPLKVAIIGTRRPTPYSKQHTITLARELAKNGAVIVSGGALGV

DIIAQENALPKTIMLSPCSLDLIYPTNNHKVIQEIAQNGLILSEYEKDFMPVKGSFLARNRLVIALSDVVIIPQADLKSG

SMSSARLAQKYQKPLFVLPQRLNESDGTNELLEKGQAQGIFNIQNFINTLLKDYHLKEMPEMKDEFLEYFAKNPSYEEAY

LKFGDKLLEYELLGKIKRINHLVVLA

Nucleotide

Download Length: 801 bp

                                >NTDB_id=919369 VA211_RS05600 WP_324684589.1 1156736..1157536(-) (dprA) [Helicobacter pylori strain P08204]

ATGAAAAGTAATTTCCAATACAGCACGCTAGAAAATATCCCTAAAGCCTTTGACATTCTCAAAGACCCCCCTAAAAAACT

CTATTGTGTGGGCGATACCAAGCTTTTAGAAGCGCCTTTAAAAGTGGCTATCATCGGCACAAGAAGACCCACCCCTTACA

GCAAGCAACACACCATCACTCTAGCTAGAGAGCTTGCTAAAAATGGCGCGGTTATTGTGAGCGGAGGAGCGTTAGGCGTG

GATATTATCGCTCAAGAAAACGCCTTACCAAAAACGATCATGCTTTCGCCTTGCAGTTTGGATTTGATCTATCCTACGAA

CAACCATAAAGTGATCCAAGAAATCGCGCAAAACGGCTTGATTTTAAGCGAATATGAAAAGGATTTCATGCCCGTTAAAG

GCTCTTTTTTAGCGAGAAACCGCCTGGTGATCGCTTTAAGCGATGTAGTGATTATCCCCCAAGCGGATTTAAAAAGCGGC

TCTATGAGTAGCGCGAGATTAGCCCAAAAATACCAAAAACCCTTATTTGTTTTACCCCAACGCCTGAATGAAAGCGATGG

CACTAATGAGCTTTTAGAAAAAGGGCAGGCTCAAGGGATATTTAATATTCAAAATTTTATAAACACCCTTTTAAAAGACT

ACCATTTAAAAGAAATGCCTGAAATGAAAGATGAATTTTTAGAATATTTTGCGAAAAACCCTAGCTATGAAGAGGCGTAT

CTCAAATTTGGGGATAAGCTTTTAGAATACGAGCTGTTGGGTAAGATTAAGCGCATCAATCATCTCGTGGTGTTAGCATG

A

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(12-197)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
dprA	Helicobacter pylori 26695	96.992	100	0.97
dprA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	47.788	84.962	0.406

Detailed information NTG0919369