Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   VA211_RS05595 Genome accession   NZ_CP141771
Coordinates   1156335..1156739 (-) Length   134 a.a.
NCBI ID   WP_324684587.1    Uniprot ID   -
Organism   Helicobacter pylori strain P08204     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1151335..1161739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VA211_RS05555 - 1151500..1152600 (-) 1101 WP_324684573.1 hypothetical protein -
  VA211_RS05560 - 1152590..1153375 (-) 786 WP_324684575.1 hypothetical protein -
  VA211_RS05565 - 1153375..1153761 (-) 387 WP_324684577.1 DUF1294 domain-containing protein -
  VA211_RS05570 - 1154088..1154249 (-) 162 WP_324684579.1 lysozyme -
  VA211_RS05575 - 1154269..1154763 (-) 495 WP_324684581.1 glycoside hydrolase family protein -
  VA211_RS05580 - 1154774..1155334 (-) 561 WP_324684583.1 hypothetical protein -
  VA211_RS05585 - 1155318..1155656 (-) 339 WP_000699911.1 hypothetical protein -
  VA211_RS05590 - 1155844..1156167 (-) 324 WP_324684585.1 tetratricopeptide repeat protein -
  VA211_RS05595 dprB 1156335..1156739 (-) 405 WP_324684587.1 Holliday junction resolvase RuvX Machinery gene
  VA211_RS05600 dprA 1156736..1157536 (-) 801 WP_324684589.1 DNA-processing protein DprA Machinery gene
  VA211_RS05605 minE 1157543..1157776 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  VA211_RS05610 minD 1157773..1158579 (-) 807 WP_324684592.1 septum site-determining protein MinD -
  VA211_RS05615 ilvC 1158604..1159596 (-) 993 WP_324684594.1 ketol-acid reductoisomerase -
  VA211_RS05625 - 1159845..1160627 (+) 783 WP_212853447.1 NAD+ synthase -
  VA211_RS05630 - 1160624..1161562 (+) 939 WP_324684597.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15186.56 Da        Isoelectric Point: 8.2908

>NTDB_id=919368 VA211_RS05595 WP_324684587.1 1156335..1156739(-) (dprB) [Helicobacter pylori strain P08204]
MILACDVGLKRIGIAVLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTHARIEHFIKLVGFKGE
IVFINEDNSSIEAYDNLEHLGRKNKRLATKDGRLDSLSACRILERYCQQVLKDH

Nucleotide


Download         Length: 405 bp        

>NTDB_id=919368 VA211_RS05595 WP_324684587.1 1156335..1156739(-) (dprB) [Helicobacter pylori strain P08204]
ATGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGAATCGCTGTGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAGAAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAAGTGCTAGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGATACCCACGCCCGCATTGAGCATTTTATCAAGCTTGTAGGTTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGATAATTCCAGCATAGAAGCTTATGATAATTTAGAGCATTTGGGTAGGAAAAACAAGCGGCT
CGCTACCAAAGACGGCCGGCTAGATTCTTTGAGCGCTTGTAGGATTTTAGAGCGCTATTGCCAGCAGGTTTTGAAAGATC
ACTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

92.537

100

0.925