Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   OCW38_RS13075 Genome accession   NZ_AP025480
Coordinates   2981836..2982483 (+) Length   215 a.a.
NCBI ID   WP_261894368.1    Uniprot ID   -
Organism   Vibrio cyclitrophicus strain LMG 21359     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2976836..2987483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCW38_RS13060 - 2977381..2978823 (-) 1443 WP_261894364.1 MSHA biogenesis protein MshI -
  OCW38_RS13065 csrD 2978826..2980841 (-) 2016 WP_261894366.1 RNase E specificity factor CsrD -
  OCW38_RS13070 ssb 2981003..2981557 (-) 555 WP_010434324.1 single-stranded DNA-binding protein Machinery gene
  OCW38_RS13075 qstR 2981836..2982483 (+) 648 WP_261894368.1 LuxR C-terminal-related transcriptional regulator Regulator
  OCW38_RS13080 galU 2982641..2983513 (+) 873 WP_004735975.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  OCW38_RS13085 uvrA 2983697..2986528 (+) 2832 WP_050612918.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 25011.17 Da        Isoelectric Point: 9.8552

>NTDB_id=91935 OCW38_RS13075 WP_261894368.1 2981836..2982483(+) (qstR) [Vibrio cyclitrophicus strain LMG 21359]
MRKSRYAHTLHFLCIDPSETHLHVKEIEKHLIIPLYKMTAGDLMLFDRKQSNRILLIDYKEVPQLIVVFPNLPVMWKNNE
IILFNVPQQLPTSELLTFGVLKGLFYDSEQKVKIAKGLQQVINGDNWLPRKVTNQLLFYYRNMVNTNTTPTNVDLTIREN
QVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQNLLA

Nucleotide


Download         Length: 648 bp        

>NTDB_id=91935 OCW38_RS13075 WP_261894368.1 2981836..2982483(+) (qstR) [Vibrio cyclitrophicus strain LMG 21359]
ATGAGAAAATCTCGATATGCTCACACTTTACACTTTCTGTGCATAGATCCAAGCGAGACTCACCTACACGTAAAAGAGAT
AGAAAAGCACCTAATTATCCCACTCTACAAGATGACAGCGGGCGACTTGATGCTTTTCGATAGAAAGCAAAGTAATCGTA
TCTTACTCATCGACTATAAAGAGGTGCCACAGTTAATCGTTGTTTTCCCTAACTTACCCGTCATGTGGAAAAACAATGAG
ATCATCTTGTTCAATGTACCTCAACAGCTCCCTACCTCGGAGTTGCTCACTTTCGGCGTATTAAAAGGGCTATTTTATGA
CTCCGAACAAAAAGTGAAAATAGCAAAGGGGCTTCAACAGGTCATTAATGGTGATAATTGGTTACCACGAAAAGTAACCA
ATCAACTGCTTTTTTATTACCGTAATATGGTGAACACCAACACGACACCCACCAATGTAGATTTGACGATCAGAGAAAAC
CAAGTGATCCGTTGCCTTCAATCGGGGTCATCCAACACTCAAATAGCCGATGATTTATTTATTAGCGAGTTCACCGTAAA
GTCACACCTTTATCAGATTTTCCGTAAGTTAGCGGTTAAGAATAGAGTCCAAGCTATCGCATGGGCTAATCAGAACTTAC
TTGCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

54.419

100

0.544
  qstR Vibrio parahaemolyticus RIMD 2210633

53.023

100

0.53
  qstR Vibrio cholerae strain A1552

48.598

99.535

0.484

Multiple sequence alignment