Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   VA613_RS13590 Genome accession   NZ_CP141769
Coordinates   2734437..2734796 (-) Length   119 a.a.
NCBI ID   WP_324781256.1    Uniprot ID   -
Organism   Thiobacillus sedimenti strain SCUT-2     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2729437..2739796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VA613_RS13575 (VA613_13575) - 2731354..2733459 (-) 2106 WP_407702850.1 methyl-accepting chemotaxis protein -
  VA613_RS13580 (VA613_13580) - 2733512..2734033 (-) 522 WP_324779555.1 chemotaxis protein CheW -
  VA613_RS13585 (VA613_13585) - 2734044..2734409 (-) 366 WP_324779556.1 response regulator -
  VA613_RS13590 (VA613_13590) pilG 2734437..2734796 (-) 360 WP_324781256.1 response regulator Regulator
  VA613_RS13595 (VA613_13595) - 2734997..2735905 (-) 909 WP_324779557.1 hypothetical protein -
  VA613_RS13600 (VA613_13600) - 2736039..2736221 (-) 183 WP_324779558.1 rubredoxin -
  VA613_RS13605 (VA613_13605) - 2736275..2737117 (+) 843 WP_324779559.1 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase -
  VA613_RS13610 (VA613_13610) thiE 2737137..2737772 (+) 636 WP_324779560.1 thiamine phosphate synthase -
  VA613_RS13615 (VA613_13615) hemL 2737769..2739046 (+) 1278 WP_324779561.1 glutamate-1-semialdehyde 2,1-aminomutase -

Sequence

Protein


Download         Length: 119 a.a.        Molecular weight: 13235.23 Da        Isoelectric Point: 6.7029

>NTDB_id=919318 VA613_RS13590 WP_324781256.1 2734437..2734796(-) (pilG) [Thiobacillus sedimenti strain SCUT-2]
MVIDDSNTIRRSAEIFLNQAGCEVILAQDGFDALAKIADHEPHVVFVDIMMPRLDGYQTCSLIKRNAKYRTTPVIMLSSK
DGLFDRARGRMVGSDEYLTKPFTKDTLLTAVREHACAGA

Nucleotide


Download         Length: 360 bp        

>NTDB_id=919318 VA613_RS13590 WP_324781256.1 2734437..2734796(-) (pilG) [Thiobacillus sedimenti strain SCUT-2]
ATGGTCATCGACGACAGCAACACCATACGCCGCAGCGCGGAGATCTTCCTCAACCAGGCGGGCTGCGAGGTCATTCTGGC
GCAGGATGGCTTCGATGCGCTGGCCAAGATCGCCGACCATGAACCCCATGTCGTCTTCGTCGACATCATGATGCCGCGCC
TGGACGGCTATCAGACCTGCTCGCTGATCAAGCGCAACGCCAAGTACCGCACCACGCCGGTGATCATGCTGTCGTCCAAG
GACGGTCTGTTCGACCGGGCCCGCGGCCGTATGGTCGGGTCGGACGAATACCTGACCAAGCCGTTTACCAAGGACACGCT
GCTGACCGCCGTGCGCGAGCATGCGTGCGCGGGCGCATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(1-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

70.085

98.319

0.689
  chiS Vibrio cholerae strain A1552

36.441

99.16

0.361
  pilH Synechocystis sp. PCC 6803

38.053

94.958

0.361