Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   VA613_RS10055 Genome accession   NZ_CP141769
Coordinates   2039841..2041157 (+) Length   438 a.a.
NCBI ID   WP_324778879.1    Uniprot ID   -
Organism   Thiobacillus sedimenti strain SCUT-2     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2034841..2046157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VA613_RS10035 (VA613_10035) - 2036313..2037002 (-) 690 WP_324778875.1 PEP-CTERM sorting domain-containing protein -
  VA613_RS10040 (VA613_10040) - 2037070..2037783 (-) 714 WP_324778876.1 PEP-CTERM sorting domain-containing protein -
  VA613_RS10045 (VA613_10045) - 2038037..2038264 (+) 228 WP_324778877.1 PP0621 family protein -
  VA613_RS10050 (VA613_10050) - 2038261..2039841 (+) 1581 WP_324778878.1 HAMP domain-containing sensor histidine kinase -
  VA613_RS10055 (VA613_10055) pilR 2039841..2041157 (+) 1317 WP_324778879.1 sigma-54 dependent transcriptional regulator Regulator
  VA613_RS10060 (VA613_10060) - 2041470..2042366 (+) 897 WP_324778880.1 PEP-CTERM sorting domain-containing protein -
  VA613_RS10070 (VA613_10070) - 2042553..2042954 (-) 402 WP_324778881.1 ClpXP protease specificity-enhancing factor -
  VA613_RS10075 (VA613_10075) - 2042968..2043567 (-) 600 WP_324778882.1 glutathione S-transferase N-terminal domain-containing protein -
  VA613_RS10080 (VA613_10080) - 2043669..2044394 (-) 726 WP_324778883.1 cytochrome c1 -
  VA613_RS10085 (VA613_10085) - 2044397..2045629 (-) 1233 WP_324778884.1 cytochrome b N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 438 a.a.        Molecular weight: 47392.32 Da        Isoelectric Point: 5.2518

>NTDB_id=919309 VA613_RS10055 WP_324778879.1 2039841..2041157(+) (pilR) [Thiobacillus sedimenti strain SCUT-2]
MAKIPRILLVDDEPDLLDLMELTLVKMGLETDRAASVAEAQARLAQTRYDLCLTDMRLGDGEGLQVIEAASTLATPVPVA
VITAYGNAGNAVAALKSGAFDYLAKPVALDQLRTLVKSALKIPEAAQVEDATRDLIGASAAMQDIRARIAKLARTQAPVH
IAGESGSGKELAARLIHRLGSRADKPFVAVNCGAIPETLMESEFFGYRKGAFTGADADRDGFFQAAHGGTLFLDEVADLP
LSMQVKLLRVLQEKKVRKVGATSEEPVDVRIVSATHQNLSALVEAGRFRQDLYYRLNVIELVMPSLRDRTEDIPQLARAL
LDRLGGADVALDRDAEQALRAYAFPGNVRELENTLERALALCEGGHVTAADLNLAPALPPTAAAPGSKYPLQDYLDQTER
AAILEALEQTRYNKTAAARLLGVTFRSLRYRLERLGIE

Nucleotide


Download         Length: 1317 bp        

>NTDB_id=919309 VA613_RS10055 WP_324778879.1 2039841..2041157(+) (pilR) [Thiobacillus sedimenti strain SCUT-2]
ATGGCGAAGATTCCGCGCATCCTGCTGGTCGACGACGAGCCCGACCTGCTCGACCTGATGGAGCTGACGCTGGTGAAGAT
GGGGCTCGAGACCGACCGGGCGGCGAGCGTGGCCGAGGCCCAGGCCCGCCTGGCGCAGACGCGCTACGACCTGTGCCTCA
CCGACATGCGGCTGGGCGACGGCGAGGGCCTGCAGGTGATCGAGGCCGCCAGCACGCTGGCCACGCCGGTGCCGGTGGCC
GTCATCACCGCCTACGGCAATGCGGGCAACGCGGTCGCGGCGCTGAAATCCGGCGCGTTCGACTACCTCGCCAAGCCGGT
CGCGCTCGACCAGCTGCGCACGCTGGTCAAGTCCGCGCTGAAGATTCCCGAGGCGGCGCAGGTCGAAGACGCCACGCGCG
ACCTGATCGGCGCGTCGGCCGCGATGCAGGATATCCGCGCGCGCATCGCCAAGCTCGCGCGCACCCAGGCGCCGGTCCAC
ATCGCCGGCGAATCGGGCAGCGGCAAGGAGCTCGCGGCCCGGCTGATCCACCGCCTCGGCAGCCGCGCCGACAAGCCCTT
CGTCGCGGTGAACTGCGGCGCGATTCCCGAGACGCTGATGGAAAGCGAGTTCTTCGGCTACCGCAAGGGCGCCTTCACCG
GCGCCGACGCCGACCGCGACGGCTTCTTCCAGGCGGCCCACGGCGGCACGCTGTTTCTCGACGAGGTCGCCGACCTGCCG
CTGTCGATGCAGGTGAAGCTGCTGCGCGTGCTGCAGGAGAAGAAGGTCCGCAAGGTCGGCGCCACGAGCGAGGAGCCGGT
CGACGTGCGCATCGTCAGCGCAACGCACCAGAACCTGTCGGCGCTGGTCGAGGCCGGCCGCTTCCGCCAGGACCTCTACT
ACCGCCTGAACGTGATCGAGCTCGTGATGCCGAGCCTGCGCGACCGCACCGAGGACATCCCGCAGCTCGCGCGCGCCCTG
CTCGATCGCCTGGGCGGCGCCGACGTGGCGCTCGACCGCGACGCCGAACAGGCGCTCCGCGCCTATGCCTTCCCCGGCAA
CGTGCGCGAGCTCGAAAACACGCTCGAGCGCGCGCTGGCCCTGTGCGAGGGCGGGCACGTCACGGCGGCCGACCTCAACC
TCGCGCCGGCGCTGCCGCCGACGGCCGCCGCGCCGGGGAGCAAGTATCCGCTGCAGGACTACCTCGACCAGACCGAGCGC
GCCGCCATCCTCGAGGCGCTGGAGCAGACGCGCTACAACAAGACCGCCGCCGCCCGCCTCCTCGGCGTGACCTTCCGCAG
CCTGCGCTACCGGCTGGAGCGGCTCGGCATCGAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(395-434)

Response regulator receiver domain (Response_reg)

(7-116)

Sigma-54 interaction domain (Sigma54_activat)

(135-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

57.432

100

0.582
  pilR Acinetobacter baumannii strain A118

47.072

100

0.495
  luxO Vibrio cholerae strain A1552

37.444

100

0.381