Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   ABU640_RS08670 Genome accession   NZ_CP161854
Coordinates   1937768..1939798 (-) Length   676 a.a.
NCBI ID   WP_000029988.1    Uniprot ID   -
Organism   Vibrio cholerae strain C3616     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1932768..1944798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABU640_RS08645 (ABU640_08645) moaB 1932878..1933390 (-) 513 WP_000509705.1 molybdenum cofactor biosynthesis protein B -
  ABU640_RS08650 (ABU640_08650) moaA 1933450..1934439 (-) 990 WP_000068564.1 GTP 3',8-cyclase MoaA -
  ABU640_RS08655 (ABU640_08655) - 1934746..1935636 (+) 891 WP_000061070.1 YvcK family protein -
  ABU640_RS08660 (ABU640_08660) luxU 1935625..1935966 (-) 342 WP_001209531.1 quorum-sensing phosphorelay protein LuxU -
  ABU640_RS08665 (ABU640_08665) luxO 1935970..1937337 (-) 1368 WP_001888250.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  ABU640_RS08670 (ABU640_08670) uvrB 1937768..1939798 (-) 2031 WP_000029988.1 excinuclease ABC subunit UvrB Machinery gene
  ABU640_RS08680 (ABU640_08680) rsxA 1940680..1941261 (+) 582 WP_000141550.1 electron transport complex subunit RsxA -
  ABU640_RS08685 (ABU640_08685) rsxB 1941261..1941848 (+) 588 WP_000104488.1 electron transport complex subunit RsxB -
  ABU640_RS08690 (ABU640_08690) rsxC 1941857..1944181 (+) 2325 WP_339443308.1 electron transport complex subunit RsxC -

Sequence

Protein


Download         Length: 676 a.a.        Molecular weight: 76629.37 Da        Isoelectric Point: 5.0342

>NTDB_id=919253 ABU640_RS08670 WP_000029988.1 1937768..1939798(-) (uvrB) [Vibrio cholerae strain C3616]
MSKAFELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTIILAPNKTLAAQLYGEMKAF
FPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRLSATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLH
LRRGDVINQRDMLRRLAELQYSRNDMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEVECISLFDPLTGVITSRDLA
RFTIYPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFCSGIENYSRYLSGRAEG
EPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETLVEFGFRLPSALDNRPLKFDEFEALAPQTIFVSATPSEY
ELTKSGGEVAEQVVRPTGLLDPIIEVRPVATQVDDLLSEARIRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSD
IDTVERVEIIRDLRLGVFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTMGRAARNVNGKAILYADSITK
SMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKDIMELGDIAKSRKQKNSKVVPLAKVAEESAAYQVLTPQQLEKEIS
KLEAAMYQHAQNLEFELAAQKRDEIHQLRQQFIANS

Nucleotide


Download         Length: 2031 bp        

>NTDB_id=919253 ABU640_RS08670 WP_000029988.1 1937768..1939798(-) (uvrB) [Vibrio cholerae strain C3616]
ATGAGCAAAGCATTTGAATTGGTTTCAGACTATCAACCTGCTGGTGATCAGCCTACCGCGATTAAGCAATTGCTGGAGGG
GTTGGAAGCGGGCTTGGCTCATCAAACTCTGCTTGGGGTAACGGGTTCGGGTAAAACCTTTACGTTAGCGAATGTGATTG
CCACCGCGCAGCGTCCCACCATTATACTTGCGCCTAATAAGACACTGGCGGCTCAATTGTACGGTGAAATGAAAGCCTTT
TTTCCCAACAATGCGGTGGAGTATTTCGTTTCTTACTACGACTACTATCAACCAGAAGCCTATGTGCCGACTACGGATAC
TTTTATAGAAAAAGACGCGTCCGTGAACGCGCATATTGAACAGATGCGCTTATCGGCCACTAAAGCCTTACTTGAGCGCA
AAGATGCGGTGATTGTCGCTTCGGTTTCTGCCATCTATGGTCTGGGCGATCCGGACTCTTATCTAAAAATGATGCTCCAT
TTGCGTCGTGGTGATGTGATTAATCAACGTGACATGTTGCGTCGTTTGGCGGAGCTGCAATATTCACGCAATGATATGGC
ATTTGAGCGCGGCCAGTTCCGTGTGCGCGGAGAAGTGATTGATATTTTCCCTGCCGAATCGGATCAAGAAGCTGTTCGAG
TGGAAATGTTTGATGATGAAGTCGAATGCATCAGCTTATTTGACCCGCTGACGGGCGTGATTACGTCACGCGATTTAGCT
CGGTTTACGATTTACCCCAAAACTCACTATGTCACCCCGCGCGAGCGCATTCTTGAGGCGATAGAGCAGATTAAGAGCGA
GTTGCAGGTCCGCCGCCAATATTTGCTGGATAACAATAAATTGCTGGAAGAGCAGCGGATTTCTCAGCGAACTCAGTTTG
ATATTGAGATGATGAACGAATTGGGATTCTGCTCAGGGATCGAAAACTACTCACGTTACCTAAGTGGTCGTGCAGAAGGT
GAGCCGCCTCCAACGCTCTTTGATTACTTGCCTCACGATGGCTTGCTGATCATCGATGAATCACACGTCACCGTGCCGCA
AATTGGCGCGATGTTTAAAGGCGATCGTTCGCGAAAAGAAACGCTGGTGGAGTTCGGTTTTCGCCTGCCGTCAGCTTTAG
ATAACCGCCCACTTAAGTTTGATGAATTTGAAGCATTAGCACCGCAAACCATCTTTGTGTCAGCAACACCGAGTGAATAT
GAGCTCACTAAATCGGGTGGTGAAGTGGCGGAGCAGGTGGTGCGTCCAACCGGTTTGTTAGACCCGATCATTGAAGTACG
TCCGGTCGCCACTCAGGTGGATGATTTGCTTTCTGAAGCGCGCATTCGCGCGGCCAATGATGAGCGGATTTTGGTGACTA
CCTTAACCAAACGCATGGCCGAGGATTTAACCGAATATCTGCATGAGCATGGTGTGAAAGTTCGCTATTTACACTCGGAC
ATTGATACCGTCGAACGGGTAGAAATTATTCGTGATTTACGATTAGGGGTGTTTGATGTGTTGGTGGGGATCAACTTGCT
ACGTGAAGGTCTGGATATGCCAGAAGTCGCTTTAGTGGCGATTTTGGATGCTGATAAAGAAGGTTTTTTGCGTTCCGAGC
GTTCACTCATTCAGACCATGGGTCGTGCAGCACGTAACGTGAATGGTAAAGCAATTTTGTATGCCGACTCGATCACCAAA
TCCATGCGTAAAGCGATCGATGAAACCGAGCGTCGCCGTGAGAAGCAGCTGGCTTATAATGAGCAGCGCGGTATCACGCC
GCAGCCTTTAAAACGCAGCGTTAAAGACATCATGGAGCTGGGCGATATTGCGAAATCGCGTAAACAGAAGAACAGCAAAG
TGGTGCCATTGGCGAAAGTAGCTGAAGAATCGGCGGCTTACCAAGTGTTGACTCCTCAGCAGCTTGAAAAAGAGATCAGT
AAATTAGAAGCCGCAATGTATCAGCATGCGCAGAACTTAGAGTTTGAGTTAGCGGCGCAAAAACGTGATGAAATTCATCA
GTTGCGTCAGCAGTTTATCGCCAATAGTTAG

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(16-119)

UvrB/uvrC motif (UVR)

(636-671)

Helicase conserved C-terminal domain (Helicase_C)

(442-545)

Ultra-violet resistance protein B (UvrB)

(553-594)

UvrB interaction domain (UvrB_inter)

(159-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

55.539

97.485

0.541
  uvrB Streptococcus pneumoniae R6

55.539

97.485

0.541
  uvrB Streptococcus pneumoniae D39

55.539

97.485

0.541