Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   OCW38_RS01330 Genome accession   NZ_AP025480
Coordinates   300910..301542 (-) Length   210 a.a.
NCBI ID   WP_004729651.1    Uniprot ID   A0AAN0LME0
Organism   Vibrio cyclitrophicus strain LMG 21359     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 295910..306542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCW38_RS01315 astA 297213..298232 (+) 1020 WP_016767993.1 arginine N-succinyltransferase -
  OCW38_RS01320 astD 298272..299729 (+) 1458 WP_010435219.1 succinylglutamate-semialdehyde dehydrogenase -
  OCW38_RS01325 - 299941..300732 (+) 792 WP_010435216.1 DUF1338 domain-containing protein -
  OCW38_RS01330 crp 300910..301542 (-) 633 WP_004729651.1 cAMP-activated global transcriptional regulator CRP Regulator
  OCW38_RS01335 - 301782..302651 (-) 870 WP_010435210.1 phosphoribulokinase -
  OCW38_RS01340 - 302729..302941 (-) 213 WP_010435208.1 YheU family protein -
  OCW38_RS01345 - 303040..304047 (-) 1008 WP_016783703.1 hydrolase -
  OCW38_RS01350 - 304319..304789 (-) 471 WP_010435202.1 TIGR02444 family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23623.39 Da        Isoelectric Point: 7.4009

>NTDB_id=91910 OCW38_RS01330 WP_004729651.1 300910..301542(-) (crp) [Vibrio cyclitrophicus strain LMG 21359]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMANRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=91910 OCW38_RS01330 WP_004729651.1 300910..301542(-) (crp) [Vibrio cyclitrophicus strain LMG 21359]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACATTAGAGTGGTTCCTTTCACACTGTCATATTCATAAGTACCCATCAAA
AAGTACTTTGATTCATGCTGGTGAAAAGGCAGAAACCTTGTACTACATTGTTAAAGGTTCTGTGGCAGTTCTTATCAAAG
ACGAAGAAGGTAAGGAAATGATTCTTTCTTACCTAAACCAAGGCGACTTCATCGGTGAGCTAGGCTTATTCGAAGAAGAC
CAAGAGCGTACAGCTTGGGTTCGTGCAAAATCTCCTTGTGAAGTAGCTGAAATTTCTTTCAAGAAATTCCGTCAACTTAT
CCAAGTGAACCCAGACATCCTAATGCGTCTATCAGCGCAAATGGCAAACCGTCTACAAGTAACTAGCCAAAAAGTTGGTG
ACTTAGCGTTCCTTGACGTAACTGGTCGTATCGCACAAACGCTACTAAACCTAGCAAAACAACCAGATGCAATGACTCAC
CCTGACGGCATGCAAATCAAGATCACTCGCCAAGAGATTGGCCAGATCGTTGGTTGTTCTCGTGAGACAGTTGGTCGTAT
CTTGAAGATGCTAGAAGAGCAGAACCTAATTTCTGCACACGGTAAAACTATCGTGGTATATGGCACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment