Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | OCW38_RS01250 | Genome accession | NZ_AP025480 |
| Coordinates | 281604..282233 (+) | Length | 209 a.a. |
| NCBI ID | WP_010435284.1 | Uniprot ID | A0AAN0LMD0 |
| Organism | Vibrio cyclitrophicus strain LMG 21359 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 276604..287233
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OCW38_RS01235 | - | 277278..279836 (-) | 2559 | WP_032545551.1 | penicillin-binding protein 1A | - |
| OCW38_RS01240 | pilM | 279988..281013 (+) | 1026 | WP_016787692.1 | type IV pilus assembly protein PilM | Machinery gene |
| OCW38_RS01245 | pilN | 280997..281611 (+) | 615 | WP_010435288.1 | PilN domain-containing protein | Machinery gene |
| OCW38_RS01250 | pilO | 281604..282233 (+) | 630 | WP_010435284.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| OCW38_RS01255 | pilP | 282220..282738 (+) | 519 | WP_016787693.1 | pilus assembly protein PilP | Machinery gene |
| OCW38_RS01260 | pilQ | 282798..284489 (+) | 1692 | WP_016787694.1 | type IV pilus secretin PilQ | Machinery gene |
| OCW38_RS01265 | aroK | 284666..285184 (+) | 519 | WP_009848907.1 | shikimate kinase AroK | - |
| OCW38_RS01270 | aroB | 285209..286297 (+) | 1089 | WP_010435273.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 209 a.a. Molecular weight: 24324.99 Da Isoelectric Point: 4.9074
>NTDB_id=91907 OCW38_RS01250 WP_010435284.1 281604..282233(+) (pilO) [Vibrio cyclitrophicus strain LMG 21359]
MANLQNRISWQNRMSLQDLDVDEITEWPLLPQLLVILLLMVLIQGLGTWLYILPLDDELQKMKQQEQTLKATLRIKANKV
AALPKLQSQLDELTSRYDYLLEQLPVQKELASMLASVNELGLDNKLTFTRIDWGQKQNKAFLYRLPLNIELTGDYHEIGD
FSAAIAKLPRIISFDDVNWQRVSQESSTLHFRVRAYTYQFKSEVNDETQ
MANLQNRISWQNRMSLQDLDVDEITEWPLLPQLLVILLLMVLIQGLGTWLYILPLDDELQKMKQQEQTLKATLRIKANKV
AALPKLQSQLDELTSRYDYLLEQLPVQKELASMLASVNELGLDNKLTFTRIDWGQKQNKAFLYRLPLNIELTGDYHEIGD
FSAAIAKLPRIISFDDVNWQRVSQESSTLHFRVRAYTYQFKSEVNDETQ
Nucleotide
Download Length: 630 bp
>NTDB_id=91907 OCW38_RS01250 WP_010435284.1 281604..282233(+) (pilO) [Vibrio cyclitrophicus strain LMG 21359]
ATGGCTAACCTTCAAAATAGGATTAGTTGGCAAAATAGGATGAGCTTGCAAGATCTTGATGTTGATGAAATCACCGAATG
GCCGTTACTGCCTCAATTACTGGTGATTCTGTTGTTGATGGTGCTTATCCAAGGATTAGGGACTTGGCTCTATATTCTGC
CTTTGGACGATGAGCTACAGAAAATGAAACAACAAGAGCAAACCTTAAAAGCGACCTTGAGAATAAAGGCCAATAAGGTT
GCAGCCTTGCCTAAGTTGCAGAGTCAGTTAGATGAATTAACTAGCCGTTACGACTACTTGTTAGAGCAACTACCGGTTCA
AAAGGAGCTGGCCAGCATGTTGGCCTCAGTGAATGAACTTGGCTTGGATAACAAGCTGACGTTTACACGGATTGATTGGG
GGCAGAAGCAAAACAAAGCGTTTCTGTATCGGTTACCTCTCAATATTGAGTTGACGGGTGACTACCATGAGATTGGTGAT
TTCTCGGCGGCCATCGCTAAGCTGCCACGAATTATTAGCTTTGATGATGTGAACTGGCAGCGAGTCAGTCAAGAAAGTAG
CACGCTGCACTTTAGGGTTCGCGCTTATACCTACCAGTTTAAGTCGGAGGTGAATGATGAAACCCAGTAA
ATGGCTAACCTTCAAAATAGGATTAGTTGGCAAAATAGGATGAGCTTGCAAGATCTTGATGTTGATGAAATCACCGAATG
GCCGTTACTGCCTCAATTACTGGTGATTCTGTTGTTGATGGTGCTTATCCAAGGATTAGGGACTTGGCTCTATATTCTGC
CTTTGGACGATGAGCTACAGAAAATGAAACAACAAGAGCAAACCTTAAAAGCGACCTTGAGAATAAAGGCCAATAAGGTT
GCAGCCTTGCCTAAGTTGCAGAGTCAGTTAGATGAATTAACTAGCCGTTACGACTACTTGTTAGAGCAACTACCGGTTCA
AAAGGAGCTGGCCAGCATGTTGGCCTCAGTGAATGAACTTGGCTTGGATAACAAGCTGACGTTTACACGGATTGATTGGG
GGCAGAAGCAAAACAAAGCGTTTCTGTATCGGTTACCTCTCAATATTGAGTTGACGGGTGACTACCATGAGATTGGTGAT
TTCTCGGCGGCCATCGCTAAGCTGCCACGAATTATTAGCTTTGATGATGTGAACTGGCAGCGAGTCAGTCAAGAAAGTAG
CACGCTGCACTTTAGGGTTCGCGCTTATACCTACCAGTTTAAGTCGGAGGTGAATGATGAAACCCAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio cholerae strain A1552 |
76.684 |
92.344 |
0.708 |
| pilO | Vibrio campbellii strain DS40M4 |
74.054 |
88.517 |
0.656 |