Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   QQK14_RS05650 Genome accession   NZ_AP027957
Coordinates   1161126..1161641 (+) Length   171 a.a.
NCBI ID   WP_001130210.1    Uniprot ID   B6I678
Organism   Escherichia coli strain VE-T10     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1156126..1166641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQK14_RS05605 (VET10_10920) csrA 1156578..1156763 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  QQK14_RS05635 (VET10_10930) yqaB 1158356..1158922 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  QQK14_RS05640 (VET10_10940) yqaA 1158919..1159347 (+) 429 WP_001287454.1 YqaA family protein -
  QQK14_RS05645 (VET10_10950) gshA 1159420..1160976 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  QQK14_RS05650 (VET10_10960) luxS 1161126..1161641 (+) 516 WP_001130210.1 S-ribosylhomocysteine lyase Regulator
  QQK14_RS05655 (VET10_10970) emrB 1161705..1163243 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  QQK14_RS05660 (VET10_10980) emrA 1163260..1164432 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  QQK14_RS05665 (VET10_10990) emrR 1164559..1165089 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  QQK14_RS05670 (VET10_11000) ygaH 1165180..1165515 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  QQK14_RS05675 (VET10_11010) ygaZ 1165505..1166242 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19417.13 Da        Isoelectric Point: 4.7556

>NTDB_id=91905 QQK14_RS05650 WP_001130210.1 1161126..1161641(+) (luxS) [Escherichia coli strain VE-T10]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPEEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=91905 QQK14_RS05650 WP_001130210.1 1161126..1161641(+) (luxS) [Escherichia coli strain VE-T10]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGGAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B6I678

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737

Multiple sequence alignment