Detailed information NTG0918917

Bioinformatically predicted

Overview

• Name: comFA
• Type: Machinery gene
• Locus tag: VNN48_RS00420
• Genome accession: NZ_CP141723
• Coordinates: 77856..79112 (-)
• Length: 418 a.a.
• NCBI ID: WP_213496707.1
• Uniprot ID: -
• Organism: Lactococcus formosensis strain PAQ-208
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 72856..84112

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VNN48_RS00390 (VNN48_00390)	ald	73610..74716 (+)	1107	WP_213496711.1	alanine dehydrogenase	-
VNN48_RS00395 (VNN48_00395)	-	74835..75794 (+)	960	WP_004257953.1	PhoH family protein	-
VNN48_RS00400 (VNN48_00400)	-	75796..76269 (+)	474	WP_213432720.1	NUDIX hydrolase	-
VNN48_RS00405 (VNN48_00405)	ybeY	76279..76767 (+)	489	WP_014024619.1	rRNA maturation RNase YbeY	-
VNN48_RS00410 (VNN48_00410)	-	76751..77212 (+)	462	WP_017369707.1	diacylglycerol kinase family protein	-
VNN48_RS00415 (VNN48_00415)	-	77215..77859 (-)	645	WP_285011930.1	ComF family protein	-
VNN48_RS00420 (VNN48_00420)	comFA	77856..79112 (-)	1257	WP_213496707.1	DEAD/DEAH box helicase	Machinery gene
VNN48_RS00425 (VNN48_00425)	-	79167..79790 (+)	624	WP_407281220.1	YigZ family protein	-
VNN48_RS00430 (VNN48_00430)	-	79803..80825 (+)	1023	WP_017369703.1	DUF475 domain-containing protein	-
VNN48_RS00435 (VNN48_00435)	-	80862..81884 (-)	1023	WP_407281221.1	alpha/beta hydrolase	-
VNN48_RS00440 (VNN48_00440)	-	82202..82981 (+)	780	WP_213432715.1	formate/nitrite transporter family protein	-
VNN48_RS00445 (VNN48_00445)	glyQ	82995..83963 (+)	969	WP_017369700.1	glycine--tRNA ligase subunit alpha	-

Sequence

Protein

• Length: 418 a.a.
• Molecular weight: 47888.97 Da
• Isoelectric Point: 10.1056

>NTDB_id=918917 VNN48_RS00420 WP_213496707.1 77856..79112(-) (comFA) [Lactococcus formosensis strain PAQ-208]
MNELYGRLLLQKELTKIPDEVILFDGMKEVSKTIIMCNRCGKKSKKKEVYLPVGAYYCPHCIQMGRVRSDEKLYHLPQKN
FTAVSCLKWQGKLTGPQQYLSDNLLNLHRQQKTVLVQAVTGAGKTEMIYQVIDATLKKGKAVGLTSPRIDVCLELYYRLK
RDFSCPISLLHGKGEKYSRSPLVIATTHQLLRFRHAFDLLILDEVDAFPFPDNEMLYFALAQARKPSSSLIYLTATTTNN
LEKQVKLGQIEKLQLPRRFHGFPLVLPQFFWQSKFYKMIKKQRESGLPLLIFAPEIRLGEKLCQDLQSSFPHEEIAFVAS
TSLERLESVERFRHGKVSILVSTTILERGVTFPKVDVFVFQSHHHNFTRSSLIQIAGRVGRSTERPDGKVIFFHLGKTTA
MLEAYKDIRNMNKAGGFQ

Nucleotide

• Length: 1257 bp

>NTDB_id=918917 VNN48_RS00420 WP_213496707.1 77856..79112(-) (comFA) [Lactococcus formosensis strain PAQ-208]
ATGAATGAATTATACGGTAGACTTCTTCTGCAAAAAGAATTGACGAAAATACCAGACGAAGTCATACTTTTTGATGGTAT
GAAAGAAGTTTCAAAAACGATTATCATGTGTAACCGCTGTGGTAAAAAGAGTAAGAAAAAAGAGGTTTATCTCCCCGTTG
GTGCTTATTATTGCCCGCATTGTATTCAGATGGGGCGTGTTCGCTCTGATGAAAAACTTTATCACCTTCCACAGAAAAAT
TTTACTGCAGTTTCTTGTCTAAAATGGCAAGGAAAGCTCACAGGTCCTCAGCAATATCTCTCCGATAATTTACTTAATCT
GCATCGGCAGCAAAAAACAGTGCTGGTACAGGCTGTAACAGGGGCAGGAAAGACGGAAATGATTTATCAAGTCATTGATG
CCACCTTAAAGAAAGGAAAAGCTGTGGGTTTGACGAGTCCACGCATTGATGTTTGTCTAGAACTTTACTATCGCTTAAAG
AGGGATTTTTCCTGTCCCATCTCGCTTTTGCATGGAAAGGGTGAGAAATACAGCCGTTCTCCTCTTGTAATTGCAACCAC
ACATCAGCTTTTACGTTTTCGTCATGCCTTTGATTTACTCATTCTCGACGAAGTTGACGCTTTTCCATTTCCAGATAATG
AAATGCTTTATTTTGCGCTGGCTCAAGCTCGAAAACCCTCTTCAAGCTTGATTTATCTTACTGCAACAACCACCAACAAT
TTGGAAAAACAAGTCAAGTTGGGGCAAATCGAAAAGTTACAACTTCCCCGACGCTTTCATGGTTTTCCACTAGTACTTCC
GCAATTTTTTTGGCAGAGCAAGTTTTACAAGATGATCAAAAAACAACGCGAATCTGGTTTACCATTACTTATCTTTGCCC
CTGAAATAAGGCTGGGAGAAAAACTGTGCCAAGACTTACAAAGCAGTTTTCCTCATGAAGAAATTGCCTTTGTTGCATCA
ACGAGTCTTGAACGCTTAGAGTCTGTGGAACGTTTTCGACACGGAAAAGTTTCTATCCTTGTCTCAACGACTATTTTAGA
ACGTGGCGTAACCTTCCCTAAGGTTGACGTTTTTGTATTTCAAAGTCACCACCATAATTTCACAAGATCAAGCCTCATCC
AAATTGCCGGACGAGTAGGTCGAAGTACCGAAAGACCTGACGGCAAAGTGATTTTCTTTCATTTAGGAAAAACAACAGCA
ATGTTGGAAGCTTATAAAGATATCAGAAATATGAATAAAGCAGGAGGTTTCCAATGA

Domains

Predicted by InterproScan.

• Helicase conserved C-terminal domain (Helicase_C) (274-382)

• Type III restriction enzyme, res subunit (ResIII) (93-236)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFA	Lactococcus lactis subsp. cremoris KW2	56.642	95.455	0.541
comFA/cflA	Streptococcus pneumoniae TIGR4	52.927	100	0.541
comFA/cflA	Streptococcus pneumoniae Rx1	52.927	100	0.541
comFA/cflA	Streptococcus pneumoniae D39	52.927	100	0.541
comFA/cflA	Streptococcus pneumoniae R6	52.927	100	0.541
comFA/cflA	Streptococcus mitis SK321	52.225	100	0.533
comFA/cflA	Streptococcus mitis NCTC 12261	51.522	100	0.526
comFA	Bacillus subtilis subsp. subtilis str. 168	38.041	100	0.4
comFA	Latilactobacillus sakei subsp. sakei 23K	38.035	94.976	0.361