Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   OC193_RS14270 Genome accession   NZ_AP025476
Coordinates   3159866..3160498 (+) Length   210 a.a.
NCBI ID   WP_004729651.1    Uniprot ID   A0AAN0LME0
Organism   Vibrio crassostreae strain LMG 22240     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3154866..3165498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OC193_RS14250 - 3156621..3157091 (+) 471 WP_048605369.1 TIGR02444 family protein -
  OC193_RS14255 - 3157367..3158359 (+) 993 WP_048663030.1 hydrolase -
  OC193_RS14260 - 3158467..3158679 (+) 213 WP_010435208.1 YheU family protein -
  OC193_RS14265 - 3158757..3159626 (+) 870 WP_010435210.1 phosphoribulokinase -
  OC193_RS14270 crp 3159866..3160498 (+) 633 WP_004729651.1 cAMP-activated global transcriptional regulator CRP Regulator
  OC193_RS14275 - 3160681..3161472 (-) 792 WP_048659154.1 DUF1338 domain-containing protein -
  OC193_RS14280 astD 3161686..3163143 (-) 1458 WP_048662992.1 succinylglutamate-semialdehyde dehydrogenase -
  OC193_RS14285 astA 3163183..3164202 (-) 1020 WP_048605373.1 arginine N-succinyltransferase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23623.39 Da        Isoelectric Point: 7.4009

>NTDB_id=91886 OC193_RS14270 WP_004729651.1 3159866..3160498(+) (crp) [Vibrio crassostreae strain LMG 22240]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMANRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=91886 OC193_RS14270 WP_004729651.1 3159866..3160498(+) (crp) [Vibrio crassostreae strain LMG 22240]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACATTAGAGTGGTTCCTTTCACACTGTCATATTCATAAGTACCCTTCAAA
AAGTACTTTGATTCATGCTGGTGAAAAGGCAGAAACCTTGTACTACATCGTTAAAGGTTCTGTGGCAGTTCTTATCAAAG
ACGAAGAAGGTAAGGAAATGATTCTTTCTTACCTAAACCAAGGCGACTTCATCGGTGAGCTTGGCTTGTTCGAAGAAGAC
CAAGAGCGTACTGCTTGGGTTCGTGCTAAATCTCCTTGTGAAGTAGCTGAAATTTCTTTCAAGAAATTCCGTCAACTTAT
CCAAGTGAACCCAGATATCCTAATGCGTCTTTCAGCGCAAATGGCAAACCGTCTACAAGTAACTAGCCAAAAGGTTGGTG
ACTTAGCGTTCCTTGACGTAACAGGTCGTATCGCTCAAACGCTACTAAACCTAGCGAAACAGCCAGATGCAATGACTCAC
CCTGACGGCATGCAAATCAAGATCACTCGTCAAGAGATTGGCCAGATCGTTGGTTGTTCTCGTGAGACAGTTGGTCGTAT
CTTGAAGATGCTAGAAGAGCAGAACCTAATTTCTGCACACGGTAAAACTATCGTGGTATACGGCACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment