Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   VNN36_RS02670 Genome accession   NZ_CP141717
Coordinates   537055..537444 (-) Length   129 a.a.
NCBI ID   WP_014024245.1    Uniprot ID   A0AA43PFR7
Organism   Lactococcus garvieae strain R22-8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 530603..537444 537055..537444 within 0


Gene organization within MGE regions


Location: 530603..537444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN36_RS02635 (VNN36_02635) tmk 530603..531232 (-) 630 WP_165705557.1 dTMP kinase -
  VNN36_RS02640 (VNN36_02640) yycF 531443..532144 (+) 702 WP_003133894.1 response regulator YycF -
  VNN36_RS02645 (VNN36_02645) - 532137..533555 (+) 1419 WP_339013930.1 ATP-binding protein -
  VNN36_RS02650 (VNN36_02650) - 533552..534364 (+) 813 WP_003133892.1 MBL fold metallo-hydrolase -
  VNN36_RS02655 (VNN36_02655) groL 534415..536040 (-) 1626 WP_003133890.1 chaperonin GroEL -
  VNN36_RS02660 (VNN36_02660) groES 536069..536350 (-) 282 WP_003133888.1 co-chaperone GroES -
  VNN36_RS02665 (VNN36_02665) - 536467..536997 (-) 531 WP_339013935.1 ClbS/DfsB family four-helix bundle protein -
  VNN36_RS02670 (VNN36_02670) ssbB 537055..537444 (-) 390 WP_014024245.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 14730.90 Da        Isoelectric Point: 9.3830

>NTDB_id=918753 VNN36_RS02670 WP_014024245.1 537055..537444(-) (ssbB) [Lactococcus garvieae strain R22-8]
MNKTLLVGRLVADPELTKTSNGKSLLRINLAVKRRYKNASGEKDTDFFTLVFWEKQAEHCMSYAKKGALLAVEGEIRSRS
YVDKNEQKRYVTEVLVKAFDLLESRATVAMRQDSIENSALNLKEDELPF

Nucleotide


Download         Length: 390 bp        

>NTDB_id=918753 VNN36_RS02670 WP_014024245.1 537055..537444(-) (ssbB) [Lactococcus garvieae strain R22-8]
ATGAATAAAACGTTATTGGTGGGTCGACTCGTTGCGGATCCAGAACTTACTAAAACATCCAATGGGAAAAGTCTATTGAG
GATAAATCTCGCTGTCAAGCGACGTTATAAAAATGCTTCAGGTGAAAAAGACACAGACTTTTTTACTTTGGTCTTTTGGG
AAAAACAGGCGGAACACTGTATGTCTTATGCTAAAAAAGGAGCCTTGCTTGCTGTGGAAGGTGAGATACGAAGCAGGAGT
TATGTGGACAAGAATGAACAAAAACGCTATGTGACAGAAGTACTCGTAAAAGCGTTTGACCTTTTGGAAAGTCGCGCAAC
TGTTGCCATGCGACAAGATTCTATAGAAAATAGTGCGCTTAATTTAAAAGAAGACGAATTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Lactococcus lactis subsp. cremoris KW2

56.589

100

0.566
  ssbB/cilA Streptococcus mitis NCTC 12261

51.538

100

0.519
  ssbB/cilA Streptococcus pneumoniae TIGR4

51.538

100

0.519
  ssbB/cilA Streptococcus pneumoniae R6

50.769

100

0.512
  ssbB/cilA Streptococcus pneumoniae Rx1

50.769

100

0.512
  ssbB/cilA Streptococcus pneumoniae D39

50.769

100

0.512
  ssbB/cilA Streptococcus mitis SK321

50.769

100

0.512
  ssbA Streptococcus mutans UA159

50

100

0.504
  ssbB Streptococcus sobrinus strain NIDR 6715-7

50

100

0.504
  ssb Latilactobacillus sakei subsp. sakei 23K

42.857

86.822

0.372