Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   VNN36_RS02825 Genome accession   NZ_CP141717
Coordinates   569483..570634 (-) Length   383 a.a.
NCBI ID   WP_339013954.1    Uniprot ID   -
Organism   Lactococcus garvieae strain R22-8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 564483..575634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN36_RS02795 (VNN36_02795) - 564863..565543 (-) 681 WP_264308358.1 GTP pyrophosphokinase family protein -
  VNN36_RS02800 (VNN36_02800) - 565861..566457 (+) 597 WP_003133845.1 CYTH domain-containing protein -
  VNN36_RS02805 (VNN36_02805) - 566586..567104 (+) 519 WP_014024226.1 hypothetical protein -
  VNN36_RS02810 (VNN36_02810) - 567163..567519 (-) 357 WP_003133842.1 YlbG family protein -
  VNN36_RS02815 (VNN36_02815) - 567503..567877 (-) 375 WP_339013951.1 YlbF family regulator -
  VNN36_RS02820 (VNN36_02820) - 568084..569448 (+) 1365 WP_074750713.1 amino acid permease -
  VNN36_RS02825 (VNN36_02825) recA 569483..570634 (-) 1152 WP_339013954.1 recombinase RecA Machinery gene
  VNN36_RS02830 (VNN36_02830) mutM 570738..571559 (-) 822 WP_339013957.1 DNA-formamidopyrimidine glycosylase -
  VNN36_RS02835 (VNN36_02835) era 571754..572665 (-) 912 WP_003133835.1 GTPase Era -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 40910.82 Da        Isoelectric Point: 5.0750

>NTDB_id=918754 VNN36_RS02825 WP_339013954.1 569483..570634(-) (recA) [Lactococcus garvieae strain R22-8]
MATKKKKKLEDITKKYGAEREKALKDALDLIEKDFGKGSLMRLGEAASQKVQVTSSGSLALDIALGAGGYPKGRIIEIYG
PESSGKTTVALHAVAQVQSEGGIAAFIDAEHALDPVYAAAIGVDIDQLLLSQPDYGEQGLQIAEKLIESGAVDLVVVDSV
AALTPRAEIDGEIGDSTVGLQARMMSQAMRKLAAGINKTKTTAIFINQLREKVGVMFGSPETTPGGRALKFYASVRLDVR
GSTKIEEGSGDNKTAIGKLTKIKVVKNKVAPPFKVALVDIMFGEGISKTGELLTIAVEEGIVKKAGAWFSYNDEKIGQGA
EKAKAFLKDNPEIFNEIDRKVRQNHGLIEGDEADEKEEVKPAKADEKAKVEAAGVEEIELELE

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=918754 VNN36_RS02825 WP_339013954.1 569483..570634(-) (recA) [Lactococcus garvieae strain R22-8]
ATGGCTACAAAGAAAAAGAAAAAATTAGAAGATATCACAAAAAAATATGGTGCAGAACGTGAAAAAGCGTTAAAAGATGC
GCTTGACCTTATCGAAAAGGATTTTGGTAAAGGTTCTTTGATGCGTTTGGGTGAAGCTGCGAGCCAAAAAGTTCAAGTGA
CAAGTTCAGGAAGCTTGGCTTTGGATATTGCACTTGGTGCCGGTGGTTATCCTAAAGGTCGTATCATCGAAATCTACGGA
CCAGAAAGTTCTGGTAAGACTACGGTTGCGTTGCATGCGGTTGCTCAAGTGCAATCCGAAGGCGGGATTGCTGCCTTTAT
CGATGCGGAGCACGCTTTGGATCCTGTCTATGCTGCAGCGATCGGTGTCGACATTGACCAACTTCTTTTGTCACAACCTG
ACTATGGTGAACAAGGCTTACAAATTGCTGAAAAATTGATTGAATCTGGTGCAGTGGACCTTGTTGTTGTCGACTCTGTT
GCTGCCTTGACACCCCGTGCCGAAATTGACGGTGAAATCGGAGATTCGACAGTTGGTTTGCAAGCACGTATGATGAGTCA
AGCCATGCGTAAGCTTGCTGCAGGCATCAACAAAACAAAAACAACAGCAATCTTTATCAACCAATTGCGTGAAAAAGTTG
GTGTTATGTTTGGGAGTCCTGAAACAACACCTGGTGGTCGTGCCTTGAAATTCTATGCTTCTGTACGTTTAGATGTTCGT
GGCAGCACAAAAATCGAAGAAGGTTCCGGTGACAACAAAACAGCCATTGGTAAATTAACGAAGATTAAAGTCGTTAAAAA
CAAAGTTGCGCCACCGTTTAAAGTTGCTTTAGTAGACATCATGTTTGGTGAAGGTATTTCTAAAACAGGTGAACTCTTAA
CCATTGCCGTTGAAGAAGGCATTGTGAAGAAAGCAGGGGCTTGGTTCTCTTATAATGACGAAAAAATCGGTCAAGGTGCG
GAGAAAGCGAAAGCCTTCCTTAAAGATAATCCTGAAATTTTCAATGAAATCGACCGTAAAGTACGTCAAAATCACGGTTT
GATTGAAGGTGATGAAGCGGATGAAAAAGAAGAGGTTAAACCAGCAAAAGCAGATGAAAAAGCAAAAGTTGAAGCTGCTG
GCGTAGAAGAAATCGAGCTTGAATTAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Lactococcus lactis subsp. cremoris KW2

86.364

91.906

0.794
  recA Streptococcus mitis NCTC 12261

78.158

99.217

0.775
  recA Streptococcus mitis SK321

78.158

99.217

0.775
  recA Streptococcus pneumoniae Rx1

77.895

99.217

0.773
  recA Streptococcus pneumoniae D39

77.895

99.217

0.773
  recA Streptococcus pneumoniae R6

77.895

99.217

0.773
  recA Streptococcus pneumoniae TIGR4

77.895

99.217

0.773
  recA Streptococcus mutans UA159

77.322

95.561

0.739
  recA Streptococcus pyogenes NZ131

80.523

89.817

0.723
  recA Latilactobacillus sakei subsp. sakei 23K

63.636

91.906

0.585
  recA Bacillus subtilis subsp. subtilis str. 168

65.455

86.162

0.564
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.347

87.99

0.522
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.303

86.162

0.52
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.017

89.556

0.52
  recA Glaesserella parasuis strain SC1401

57.31

89.295

0.512
  recA Acinetobacter baumannii D1279779

60.185

84.595

0.509
  recA Vibrio cholerae strain A1552

60.185

84.595

0.509
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.185

84.595

0.509
  recA Acinetobacter baylyi ADP1

60.185

84.595

0.509
  recA Helicobacter pylori strain NCTC11637

58.359

85.901

0.501
  recA Helicobacter pylori 26695

58.359

85.901

0.501
  recA Neisseria gonorrhoeae MS11

59.119

83.029

0.491
  recA Neisseria gonorrhoeae MS11

59.119

83.029

0.491
  recA Neisseria gonorrhoeae strain FA1090

59.119

83.029

0.491
  recA Ralstonia pseudosolanacearum GMI1000

58.991

82.768

0.488
  recA Pseudomonas stutzeri DSM 10701

56.173

84.595

0.475