Detailed information NTG0918692

Bioinformatically predicted

Overview

• Name: comFA
• Type: Machinery gene
• Locus tag: VNN41_RS00380
• Genome accession: NZ_CP141713
• Coordinates: 71165..72421 (-)
• Length: 418 a.a.
• NCBI ID: WP_407350495.1
• Uniprot ID: -
• Organism: Lactococcus garvieae strain VC11
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 66165..77421

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VNN41_RS00345 (VNN41_00345)	rpmA	66285..66569 (+)	285	WP_004257956.1	50S ribosomal protein L27	-
VNN41_RS00350 (VNN41_00350)	ald	66920..68026 (+)	1107	WP_407350492.1	alanine dehydrogenase	-
VNN41_RS00355 (VNN41_00355)	-	68144..69103 (+)	960	WP_407350493.1	PhoH family protein	-
VNN41_RS00360 (VNN41_00360)	-	69105..69578 (+)	474	WP_004257950.1	NUDIX hydrolase	-
VNN41_RS00365 (VNN41_00365)	ybeY	69588..70076 (+)	489	WP_014024619.1	rRNA maturation RNase YbeY	-
VNN41_RS00370 (VNN41_00370)	-	70060..70521 (+)	462	WP_023889522.1	diacylglycerol kinase family protein	-
VNN41_RS00375 (VNN41_00375)	-	70524..71168 (-)	645	WP_407350494.1	phosphoribosyltransferase family protein	-
VNN41_RS00380 (VNN41_00380)	comFA	71165..72421 (-)	1257	WP_407350495.1	DEAD/DEAH box helicase	Machinery gene
VNN41_RS00385 (VNN41_00385)	-	72476..73099 (+)	624	WP_004257938.1	YigZ family protein	-
VNN41_RS00390 (VNN41_00390)	-	73113..74135 (+)	1023	WP_339000070.1	DUF475 domain-containing protein	-
VNN41_RS00395 (VNN41_00395)	-	74166..75188 (-)	1023	WP_407350496.1	alpha/beta hydrolase	-
VNN41_RS00400 (VNN41_00400)	-	75507..76286 (+)	780	WP_019292766.1	formate/nitrite transporter family protein	-
VNN41_RS00405 (VNN41_00405)	glyQ	76300..77268 (+)	969	WP_004257927.1	glycine--tRNA ligase subunit alpha	-

Sequence

Protein

• Length: 418 a.a.
• Molecular weight: 47814.60 Da
• Isoelectric Point: 9.9110

>NTDB_id=918692 VNN41_RS00380 WP_407350495.1 71165..72421(-) (comFA) [Lactococcus garvieae strain VC11]
MDELYGRLLLQKELTKLPDKATLFDGMQDVSKTVMMCNRCGKKIKKKEVLLPVGAYYCPHCIQMGRVRSDEKLYHLPQED
FSAASFLNWQGKLTASQQHVSDSLVKLHQQQKTVLVQAVTGAGKTEMIYQSIDNTLKKGKAVGLTSPRIDVCLELYHRLK
RDFSCPISLLHGKSEKYSRSPLVIATTHQLMRFRHAFDLLILDEVDAFPFPDNEMLYFALAQARKPSSSLIYLTATTTDN
LEKQVKLGQIEKLQLPRRFHGFPLVLPQFFWQSKFYKMVKKQRESGFPLLIFVPEIRQGEKLCQDLQSNFPNEEIAFVAS
TSLERLEAVERFRQGNISILVSTTILERGVTFPKVDVFVFQSHHHNFTRSSLIQISGLVGRSTERPEGKVFFFHLGKTTA
MLEAYKNIRNMNKAGGFL

Nucleotide

• Length: 1257 bp

>NTDB_id=918692 VNN41_RS00380 WP_407350495.1 71165..72421(-) (comFA) [Lactococcus garvieae strain VC11]
ATGGATGAATTATATGGTAGACTCCTTTTACAAAAAGAATTGACGAAACTTCCAGATAAAGCGACACTTTTTGATGGTAT
GCAAGATGTTTCCAAAACAGTGATGATGTGCAACCGCTGTGGCAAAAAGATTAAGAAAAAAGAGGTCCTTCTCCCTGTTG
GTGCTTATTATTGTCCCCATTGTATTCAAATGGGACGTGTTCGCTCGGATGAAAAACTTTACCACCTTCCACAGGAGGAT
TTTTCAGCAGCTTCTTTTCTCAACTGGCAGGGAAAACTCACAGCATCTCAGCAACATGTATCCGATAGCCTAGTCAAATT
GCATCAGCAACAAAAAACAGTACTGGTACAGGCGGTTACTGGTGCAGGAAAAACCGAAATGATTTATCAGAGCATTGATA
ACACCCTTAAAAAAGGAAAAGCTGTAGGTTTAACTAGCCCGCGTATTGATGTCTGTCTAGAGCTCTATCATCGCTTAAAG
AGAGATTTTTCTTGTCCCATCTCGCTTTTGCACGGAAAGAGTGAAAAATACAGCCGCTCGCCACTCGTAATCGCAACGAC
ACATCAGCTTATGCGTTTTCGCCATGCCTTTGACTTACTCATTCTTGATGAGGTGGATGCCTTTCCCTTTCCAGACAATG
AAATGCTTTATTTTGCGCTGGCTCAAGCCCGTAAACCTTCTTCAAGCTTGATTTATCTTACTGCAACCACCACCGATAAT
TTGGAAAAACAAGTCAAATTAGGACAAATCGAGAAGCTACAGCTTCCACGACGTTTTCATGGTTTTCCTCTGGTACTCCC
GCAATTTTTTTGGCAAAGCAAGTTTTACAAAATGGTCAAAAAACAACGCGAGTCTGGTTTTCCCTTACTTATCTTTGTCC
CTGAAATAAGACAGGGAGAAAAACTCTGCCAAGATTTACAGAGTAATTTTCCAAATGAAGAAATTGCTTTTGTCGCGTCA
ACGAGTCTTGAACGCTTAGAGGCTGTGGAACGCTTTCGTCAGGGCAATATTTCTATCCTTGTCTCAACGACCATTTTAGA
ACGTGGTGTAACTTTCCCTAAGGTTGACGTTTTTGTGTTTCAAAGTCACCACCATAATTTCACAAGATCAAGCCTCATAC
AAATTTCCGGACTAGTAGGTCGAAGTACCGAAAGACCTGAGGGTAAGGTATTTTTCTTTCATCTAGGAAAAACAACAGCG
ATGTTGGAAGCCTATAAAAATATCAGAAATATGAATAAAGCAGGGGGGTTCCTATGA

Domains

Predicted by InterproScan.

• Type III restriction enzyme, res subunit (ResIII) (92-236)

• Helicase conserved C-terminal domain (Helicase_C) (274-381)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFA	Lactococcus lactis subsp. cremoris KW2	57.143	93.78	0.536
comFA/cflA	Streptococcus pneumoniae TIGR4	52.347	100	0.533
comFA/cflA	Streptococcus pneumoniae Rx1	52.347	100	0.533
comFA/cflA	Streptococcus pneumoniae D39	52.347	100	0.533
comFA/cflA	Streptococcus pneumoniae R6	52.347	100	0.533
comFA/cflA	Streptococcus mitis SK321	51.878	100	0.529
comFA/cflA	Streptococcus mitis NCTC 12261	51.408	100	0.524
comFA	Bacillus subtilis subsp. subtilis str. 168	37.871	96.651	0.366
comFA	Latilactobacillus sakei subsp. sakei 23K	38.035	94.976	0.361