Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   VNN47_RS07965 Genome accession   NZ_CP141709
Coordinates   1560362..1560778 (+) Length   138 a.a.
NCBI ID   WP_003133718.1    Uniprot ID   -
Organism   Lactococcus garvieae strain VC13     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1555362..1565778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN47_RS07940 (VNN47_07905) guaB 1556470..1557951 (+) 1482 WP_003133714.1 IMP dehydrogenase -
  VNN47_RS07945 (VNN47_07910) rpsU 1558074..1558250 (+) 177 WP_003134539.1 30S ribosomal protein S21 -
  VNN47_RS07950 (VNN47_07915) comGA 1558437..1559381 (+) 945 WP_407350989.1 competence type IV pilus ATPase ComGA Machinery gene
  VNN47_RS07955 (VNN47_07920) comGB 1559359..1560063 (+) 705 WP_407350206.1 competence type IV pilus assembly protein ComGB Machinery gene
  VNN47_RS07960 (VNN47_07925) comYC 1560082..1560387 (+) 306 WP_016171026.1 competence type IV pilus major pilin ComGC Machinery gene
  VNN47_RS07965 (VNN47_07930) comGD 1560362..1560778 (+) 417 WP_003133718.1 competence type IV pilus minor pilin ComGD Machinery gene
  VNN47_RS07970 (VNN47_07935) comGE 1560744..1561094 (+) 351 WP_270227858.1 competence type IV pilus minor pilin ComGE -
  VNN47_RS07975 (VNN47_07940) comGF 1561064..1561465 (+) 402 WP_407357374.1 competence type IV pilus minor pilin ComGF -
  VNN47_RS07980 (VNN47_07945) - 1561698..1562543 (+) 846 WP_003133722.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  VNN47_RS07985 (VNN47_07950) - 1562629..1563498 (-) 870 WP_407350207.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15806.49 Da        Isoelectric Point: 10.0791

>NTDB_id=918668 VNN47_RS07965 WP_003133718.1 1560362..1560778(+) (comGD) [Lactococcus garvieae strain VC13]
MKNVMYRIKALTLLESLLVLFLCSFVLFLFSGSVKQSVRIARAEIFILQFERLYKDTQRMAGLKGQQQTLSASNGALYSQ
EEMVKVPEEAEINDFSITFDQKSGNSSLQKITIFLPYQKKTISYQLEIGSGKYKKRIT

Nucleotide


Download         Length: 417 bp        

>NTDB_id=918668 VNN47_RS07965 WP_003133718.1 1560362..1560778(+) (comGD) [Lactococcus garvieae strain VC13]
ATGAAAAACGTAATGTACCGAATTAAAGCCTTAACTTTACTGGAGAGTTTACTCGTTCTTTTCCTATGCTCTTTTGTTCT
TTTTCTATTTTCAGGTTCGGTCAAACAAAGTGTGAGGATAGCACGCGCAGAGATTTTTATTTTACAATTTGAACGTCTTT
ATAAGGATACTCAACGCATGGCGGGACTAAAGGGACAGCAACAGACGTTGAGTGCGAGCAATGGTGCACTCTATAGCCAA
GAGGAAATGGTGAAAGTCCCAGAGGAGGCTGAAATAAATGATTTCTCTATTACTTTTGATCAAAAATCAGGCAATTCGAG
CCTACAAAAAATCACAATATTTCTTCCCTATCAGAAAAAAACAATCTCTTATCAATTGGAGATTGGAAGCGGAAAATATA
AGAAAAGAATCACTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Lactococcus lactis subsp. cremoris KW2

48.551

100

0.486
  comYD Streptococcus mutans UA140

40.909

95.652

0.391
  comYD Streptococcus mutans UA159

40.909

95.652

0.391
  comGD/cglD Streptococcus mitis SK321

39.535

93.478

0.37
  comGD/cglD Streptococcus pneumoniae TIGR4

38.76

93.478

0.362