Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   VNN47_RS07655 Genome accession   NZ_CP141709
Coordinates   1496778..1497569 (+) Length   263 a.a.
NCBI ID   WP_003133634.1    Uniprot ID   -
Organism   Lactococcus garvieae strain VC13     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1491778..1502569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN47_RS07625 (VNN47_07590) rpmH 1492476..1492610 (+) 135 WP_003135255.1 50S ribosomal protein L34 -
  VNN47_RS07630 (VNN47_07595) - 1492759..1493670 (+) 912 WP_407350175.1 aldo/keto reductase family oxidoreductase -
  VNN47_RS07635 (VNN47_07600) - 1493871..1494137 (+) 267 WP_407350176.1 IreB family regulatory phosphoprotein -
  VNN47_RS07640 (VNN47_07605) ruvX 1494137..1494565 (+) 429 WP_003133630.1 Holliday junction resolvase RuvX -
  VNN47_RS07645 (VNN47_07610) - 1494580..1494903 (+) 324 WP_003133632.1 DUF1292 domain-containing protein -
  VNN47_RS07650 (VNN47_07615) - 1495043..1496641 (+) 1599 WP_407350177.1 glycosyltransferase -
  VNN47_RS07655 (VNN47_07620) codY 1496778..1497569 (+) 792 WP_003133634.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  VNN47_RS07660 (VNN47_07625) gatC 1497714..1498019 (+) 306 WP_407350178.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  VNN47_RS07665 (VNN47_07630) gatA 1498019..1499491 (+) 1473 WP_003133636.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  VNN47_RS07670 (VNN47_07635) gatB 1499493..1500926 (+) 1434 WP_407350179.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  VNN47_RS07675 (VNN47_07640) - 1500939..1502294 (-) 1356 WP_014024126.1 MATE family efflux transporter -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 29180.60 Da        Isoelectric Point: 4.7260

>NTDB_id=918664 VNN47_RS07655 WP_003133634.1 1496778..1497569(+) (codY) [Lactococcus garvieae strain VC13]
MATLLEKTRKITSVLQDGVTDLKQELPYDNMTERLANVIDCNACIIDTKGKLLGYSLPYEINNDRVNELFHVQKQLPEDY
ARAAIRIYDTLANITINEPLSVFPAELLGEYPNGLTTCAPIYGSGMRLGTFILWRTDGKFSDDDLVLAELATTVIGVQLS
NLKLEQMEENIRKDTMANMAVNTLSYSEMKAVKAILEELDGEEGHVIASVIADKIGITRSVIVNALRKLESAGVIESRSL
GMKGTYLKVLNQGLFTKLEGRNF

Nucleotide


Download         Length: 792 bp        

>NTDB_id=918664 VNN47_RS07655 WP_003133634.1 1496778..1497569(+) (codY) [Lactococcus garvieae strain VC13]
GTGGCTACTTTATTAGAAAAAACCCGCAAAATTACATCAGTTCTGCAAGATGGAGTAACTGATTTAAAGCAGGAGTTACC
CTATGATAACATGACAGAGCGTTTAGCCAACGTGATTGACTGTAATGCTTGTATCATTGATACAAAAGGGAAACTTTTGG
GCTATTCACTGCCATACGAAATTAACAACGATCGTGTTAATGAACTTTTCCATGTACAAAAACAATTGCCAGAAGATTAT
GCACGTGCGGCTATCCGTATCTATGACACTTTAGCAAATATCACGATTAACGAACCTTTGTCAGTATTTCCTGCAGAACT
TTTAGGTGAGTATCCTAATGGTTTGACAACATGTGCACCAATCTATGGTAGCGGTATGCGCTTGGGAACATTTATCTTAT
GGCGTACAGACGGGAAATTCAGTGATGATGACCTTGTGCTTGCAGAACTTGCAACAACAGTTATCGGTGTTCAACTTTCC
AATCTTAAACTTGAACAAATGGAAGAAAATATCCGTAAAGACACGATGGCCAATATGGCAGTCAATACACTTTCATATTC
AGAAATGAAGGCTGTGAAAGCAATTCTTGAAGAACTTGATGGTGAAGAAGGACACGTTATCGCTTCAGTCATTGCCGATA
AGATTGGCATTACCCGTTCAGTAATCGTTAATGCACTGCGTAAGCTTGAATCTGCCGGTGTTATTGAAAGTCGTTCGTTG
GGAATGAAAGGAACTTACCTCAAAGTTCTCAACCAAGGTTTGTTTACAAAACTTGAAGGCCGTAACTTCTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-259)

CodY GAF-like domain (CodY)

(3-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

82.129

100

0.821
  codY Bacillus subtilis subsp. subtilis str. 168

49.609

97.338

0.483