Detailed information NTG0918647

Bioinformatically predicted

Overview

• Name: comFA
• Type: Machinery gene
• Locus tag: VNN37_RS09825
• Genome accession: NZ_CP141707
• Coordinates: 1983356..1984612 (+)
• Length: 418 a.a.
• NCBI ID: WP_339000072.1
• Uniprot ID: -
• Organism: Lactococcus garvieae strain M21102102
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1978356..1989612

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VNN37_RS09800 (VNN37_09800)	glyQ	1978509..1979477 (-)	969	WP_004257927.1	glycine--tRNA ligase subunit alpha	-
VNN37_RS09805 (VNN37_09805)	-	1979491..1980270 (-)	780	WP_019292766.1	formate/nitrite transporter family protein	-
VNN37_RS09810 (VNN37_09810)	-	1980589..1981611 (+)	1023	WP_339000069.1	alpha/beta hydrolase	-
VNN37_RS09815 (VNN37_09815)	-	1981642..1982664 (-)	1023	WP_339000070.1	DUF475 domain-containing protein	-
VNN37_RS09820 (VNN37_09820)	-	1982678..1983301 (-)	624	WP_004257938.1	YigZ family protein	-
VNN37_RS09825 (VNN37_09825)	comFA	1983356..1984612 (+)	1257	WP_339000072.1	DEAD/DEAH box helicase	Machinery gene
VNN37_RS09830 (VNN37_09830)	-	1984609..1985253 (+)	645	WP_339000074.1	ComF family protein	-
VNN37_RS09835 (VNN37_09835)	-	1985256..1985717 (-)	462	WP_176490186.1	diacylglycerol kinase family protein	-
VNN37_RS09840 (VNN37_09840)	ybeY	1985701..1986189 (-)	489	WP_165705903.1	rRNA maturation RNase YbeY	-
VNN37_RS09845 (VNN37_09845)	-	1986199..1986672 (-)	474	WP_004257950.1	NUDIX hydrolase	-
VNN37_RS09850 (VNN37_09850)	-	1986674..1987633 (-)	960	WP_004257953.1	PhoH family protein	-
VNN37_RS09855 (VNN37_09855)	ald	1987751..1988857 (-)	1107	WP_339000078.1	alanine dehydrogenase	-
VNN37_RS09860 (VNN37_09860)	rpmA	1989194..1989478 (-)	285	WP_004257956.1	50S ribosomal protein L27	-

Sequence

Protein

• Length: 418 a.a.
• Molecular weight: 47848.62 Da
• Isoelectric Point: 9.9765

>NTDB_id=918647 VNN37_RS09825 WP_339000072.1 1983356..1984612(+) (comFA) [Lactococcus garvieae strain M21102102]
MDELYGRLLLQKELTKLPDKATLFDGMQDVSKTVMMCNRCGKKIKKKEVLLPVGAYYCPHCIQMGRVRSDEKLYHLPQED
FSAASFLNWQGKLTASQQHVSDSLVKLHQQQKTVLVQAVTGAGKTEMIYQSIDNTLKKGKAVGLTSPRIDVCLELYHRLK
RDFSCPISLLHGKSEKYSRSPLVIATTHQLMRFRHAFDLLILDEVDAFPFPDNEMLYFALAQARKPSSSLIYLTATTTDN
LEKQVKLGQIEKLQLPRRFHGFPLVLPQFFWQSKFYKMVKKQRESGFPLLIFVPEIRQGEKLCQDLQSNFPHEEIAFVAS
TSPERLEAVERFRQGNISILVSTTILERGVTFPKVDVFVFQSHHHNFTRSSLIQIAGRVGRSTERPEGKVFFFHLGKTTA
MLEAYKNIRNMNKAGGFL

Nucleotide

• Length: 1257 bp

>NTDB_id=918647 VNN37_RS09825 WP_339000072.1 1983356..1984612(+) (comFA) [Lactococcus garvieae strain M21102102]
ATGGATGAATTATATGGTAGACTCCTTTTACAAAAAGAATTGACGAAACTTCCAGATAAAGCAACACTTTTTGATGGGAT
GCAAGATGTTTCCAAAACAGTGATGATGTGCAACCGCTGTGGCAAAAAGATCAAGAAAAAAGAGGTCCTTCTCCCTGTTG
GTGCTTATTATTGTCCTCATTGTATTCAAATGGGACGTGTTCGCTCGGATGAAAAACTTTACCACCTTCCACAGGAAGAT
TTTTCAGCAGCTTCTTTTCTCAACTGGCAGGGAAAACTCACAGCATCTCAGCAACATGTATCCGATAGCCTAGTCAAATT
GCATCAGCAACAAAAAACAGTACTGGTACAGGCGGTTACTGGTGCAGGAAAAACCGAAATGATTTATCAGAGCATTGATA
ACACCCTTAAAAAAGGAAAAGCTGTAGGTTTAACTAGCCCGCGTATTGATGTCTGTCTAGAGCTCTATCATCGCTTAAAG
AGAGATTTTTCTTGTCCCATCTCGCTTTTGCACGGAAAGAGTGAAAAATACAGCCGCTCACCACTCGTAATTGCAACGAC
ACATCAGCTTATGCGTTTTCGCCATGCCTTTGACTTACTCATTCTTGATGAGGTGGATGCCTTTCCCTTTCCAGACAATG
AAATGCTTTATTTTGCGCTGGCACAAGCCCGTAAACCTTCTTCAAGCTTGATTTATCTTACTGCAACCACCACCGATAAT
TTGGAAAAACAAGTTAAATTAGGACAAATCGAGAAGCTACAGCTTCCACGACGTTTTCATGGTTTTCCTCTGGTACTCCC
GCAATTTTTTTGGCAAAGCAAGTTTTACAAAATGGTCAAAAAACAACGCGAATCTGGTTTTCCCTTACTTATCTTTGTCC
CTGAAATAAGACAGGGAGAAAAACTCTGCCAAGATTTACAGAGTAATTTTCCTCATGAAGAAATTGCTTTTGTCGCGTCA
ACAAGTCCTGAACGCTTAGAGGCTGTGGAACGCTTTCGTCAGGGCAATATTTCTATCCTTGTCTCAACGACCATTTTAGA
ACGTGGTGTAACTTTCCCTAAGGTTGACGTTTTTGTATTTCAAAGTCACCACCATAATTTCACAAGATCAAGCCTCATCC
AAATTGCCGGACGAGTAGGTCGAAGTACCGAAAGACCTGAGGGTAAGGTATTTTTCTTTCATCTAGGAAAAACAACAGCG
ATGTTAGAAGCCTATAAAAATATCAGAAATATGAATAAAGCAGGGGGGTTCCTATGA

Domains

Predicted by InterproScan.

• Type III restriction enzyme, res subunit (ResIII) (92-236)

• Helicase conserved C-terminal domain (Helicase_C) (274-382)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFA	Lactococcus lactis subsp. cremoris KW2	57.653	93.78	0.541
comFA/cflA	Streptococcus mitis SK321	52.347	100	0.533
comFA/cflA	Streptococcus pneumoniae TIGR4	52.347	100	0.533
comFA/cflA	Streptococcus pneumoniae Rx1	52.347	100	0.533
comFA/cflA	Streptococcus pneumoniae D39	52.347	100	0.533
comFA/cflA	Streptococcus pneumoniae R6	52.347	100	0.533
comFA/cflA	Streptococcus mitis NCTC 12261	51.408	100	0.524
comFA	Bacillus subtilis subsp. subtilis str. 168	38.614	96.651	0.373
comFA	Latilactobacillus sakei subsp. sakei 23K	38.791	94.976	0.368