Detailed information    

insolico Bioinformatically predicted

Overview

Name   chiS   Type   Regulator
Locus tag   ABZO29_RS45080 Genome accession   NZ_CP160403
Coordinates   9822423..9822797 (-) Length   124 a.a.
NCBI ID   WP_367325982.1    Uniprot ID   -
Organism   Streptomyces sp. HUAS ZL42     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 9817423..9827797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZO29_RS45055 (ABZO29_45055) - 9817441..9817989 (+) 549 WP_367325977.1 phosphatase PAP2 family protein -
  ABZO29_RS45060 (ABZO29_45060) - 9818117..9818536 (+) 420 WP_367325978.1 phage holin family protein -
  ABZO29_RS45065 (ABZO29_45065) - 9818533..9819003 (+) 471 WP_367325979.1 DUF3618 domain-containing protein -
  ABZO29_RS45070 (ABZO29_45070) - 9819000..9819266 (+) 267 WP_367325980.1 DUF4235 domain-containing protein -
  ABZO29_RS45075 (ABZO29_45075) - 9819698..9821662 (-) 1965 WP_367325981.1 ATP-binding protein -
  ABZO29_RS45080 (ABZO29_45080) chiS 9822423..9822797 (-) 375 WP_367325982.1 response regulator transcription factor Regulator
  ABZO29_RS45085 (ABZO29_45085) - 9823424..9826207 (+) 2784 WP_367325983.1 response regulator -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13399.41 Da        Isoelectric Point: 4.4016

>NTDB_id=918397 ABZO29_RS45080 WP_367325982.1 9822423..9822797(-) (chiS) [Streptomyces sp. HUAS ZL42]
MACVLVADDDADIRDLVAFKLTQGGHEVTTVEDGLRALQAVRELKVDIALLDIRMPGISGLDLCRQLRAAPETAALPIIL
ITARSQEGDVETGFEAGADDYIIKPFSPRELSIRVEAVLARASR

Nucleotide


Download         Length: 375 bp        

>NTDB_id=918397 ABZO29_RS45080 WP_367325982.1 9822423..9822797(-) (chiS) [Streptomyces sp. HUAS ZL42]
ATGGCGTGTGTTTTGGTCGCAGACGATGACGCCGACATCAGGGATCTTGTTGCCTTCAAGCTGACGCAGGGCGGCCATGA
GGTGACGACCGTGGAGGACGGCCTGCGGGCGCTTCAGGCTGTGCGCGAGCTGAAGGTCGACATCGCTTTGCTGGACATCC
GCATGCCGGGCATCTCCGGACTGGACTTGTGCCGTCAACTGCGTGCCGCACCAGAGACTGCCGCGCTGCCGATCATCCTG
ATCACCGCCCGCTCCCAGGAGGGAGATGTCGAGACCGGTTTCGAGGCGGGCGCGGACGACTACATCATCAAGCCCTTCAG
CCCGCGGGAGCTCTCCATCCGAGTCGAGGCGGTCTTGGCCAGGGCGAGCCGGTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chiS Vibrio cholerae strain A1552

46.154

94.355

0.435
  micA Streptococcus pneumoniae Cp1015

39.837

99.194

0.395
  vicR Streptococcus mutans UA159

37.903

100

0.379