Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   OCV39_RS01275 Genome accession   NZ_AP025472
Coordinates   290183..290815 (-) Length   210 a.a.
NCBI ID   WP_004729651.1    Uniprot ID   A0AAN0LME0
Organism   Vibrio cortegadensis strain CECT 7227     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 285183..295815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV39_RS01255 - 285278..286489 (+) 1212 WP_029203370.1 aspartate aminotransferase family protein -
  OCV39_RS01260 astA 286580..287599 (+) 1020 WP_261888799.1 arginine N-succinyltransferase -
  OCV39_RS01265 astD 287703..289160 (+) 1458 WP_261888800.1 succinylglutamate-semialdehyde dehydrogenase -
  OCV39_RS01270 - 289291..290082 (+) 792 WP_171756774.1 DUF1338 domain-containing protein -
  OCV39_RS01275 crp 290183..290815 (-) 633 WP_004729651.1 cAMP-activated global transcriptional regulator CRP Regulator
  OCV39_RS01280 - 291062..291931 (-) 870 WP_113797178.1 phosphoribulokinase -
  OCV39_RS01285 - 292019..292231 (-) 213 WP_017052557.1 YheU family protein -
  OCV39_RS01290 - 292372..293349 (-) 978 WP_113797176.1 hydrolase -
  OCV39_RS01295 - 293346..294734 (-) 1389 WP_261888801.1 PLP-dependent aminotransferase family protein -
  OCV39_RS01300 - 294863..295459 (+) 597 WP_136996035.1 LysE family translocator -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23623.39 Da        Isoelectric Point: 7.4009

>NTDB_id=91819 OCV39_RS01275 WP_004729651.1 290183..290815(-) (crp) [Vibrio cortegadensis strain CECT 7227]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMANRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=91819 OCV39_RS01275 WP_004729651.1 290183..290815(-) (crp) [Vibrio cortegadensis strain CECT 7227]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACATTAGAGTGGTTTCTTTCACACTGTCATATTCATAAGTACCCATCAAA
AAGTACGCTGATTCACGCAGGTGAAAAAGCCGAAACTTTGTATTACATTGTGAAAGGTTCAGTTGCGGTACTAATTAAAG
ATGAAGAAGGCAAAGAGATGATCTTGTCTTACCTTAACCAAGGTGACTTCATTGGTGAGCTAGGTCTTTTTGAAGAAGAC
CAAGAGCGTACAGCATGGGTTCGAGCAAAATCTCCTTGTGAAGTTGCTGAGATTTCTTTCAAGAAATTCCGCCAACTTAT
CCAAGTAAACCCAGACATCCTAATGCGTCTTTCAGCGCAAATGGCAAACCGTCTACAAGTTACTAGCCAAAAAGTAGGTG
ACTTAGCATTCCTAGATGTAACGGGCCGAATTGCACAAACGCTACTAAACCTAGCGAAACAACCTGATGCAATGACTCAC
CCTGATGGCATGCAAATTAAGATCACTCGCCAAGAAATCGGTCAAATCGTTGGCTGTTCTCGTGAAACGGTTGGTCGTAT
CTTGAAGATGCTAGAAGAGCAGAACTTGATTTCAGCTCACGGTAAGACAATTGTAGTTTACGGTACTCGCTAG

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment