Detailed information
Bioinformatically predicted
Overview
| Name | comYF | Type | Machinery gene |
| Locus tag | VNN35_RS07335 | Genome accession | NZ_CP141687 |
| Coordinates | 1472624..1472890 (+) | Length | 88 a.a. |
| NCBI ID | WP_255566449.1 | Uniprot ID | - |
| Organism | Lactococcus petauri strain UCD-JR1 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1467624..1477890
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VNN35_RS07300 (VNN35_07300) | rpsU | 1469223..1469399 (+) | 177 | WP_003134539.1 | 30S ribosomal protein S21 | - |
| VNN35_RS07305 (VNN35_07305) | comGA | 1469585..1470529 (+) | 945 | WP_195916935.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| VNN35_RS07310 (VNN35_07310) | comGB | 1470468..1471487 (+) | 1020 | WP_255566448.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| VNN35_RS07315 (VNN35_07315) | comYC | 1471506..1471811 (+) | 306 | WP_029343537.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| VNN35_RS07320 (VNN35_07320) | comGD | 1471786..1472202 (+) | 417 | WP_019336004.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| VNN35_RS07325 (VNN35_07325) | - | 1472234..1472332 (+) | 99 | WP_255566393.1 | hypothetical protein | - |
| VNN35_RS07330 (VNN35_07330) | comGE | 1472305..1472469 (+) | 165 | WP_019336003.1 | competence system putative prepilin ComGE | - |
| VNN35_RS07335 (VNN35_07335) | comYF | 1472624..1472890 (+) | 267 | WP_255566449.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| VNN35_RS07340 (VNN35_07340) | - | 1473122..1473967 (+) | 846 | WP_019336001.1 | zinc ABC transporter substrate-binding protein | - |
| VNN35_RS07345 (VNN35_07345) | - | 1474038..1474922 (-) | 885 | WP_019336000.1 | RluA family pseudouridine synthase | - |
| VNN35_RS07350 (VNN35_07350) | - | 1474998..1477286 (+) | 2289 | WP_019335999.1 | PBP1A family penicillin-binding protein | - |
Sequence
Protein
Download Length: 88 a.a. Molecular weight: 10169.57 Da Isoelectric Point: 10.1554
>NTDB_id=918087 VNN35_RS07335 WP_255566449.1 1472624..1472890(+) (comYF) [Lactococcus petauri strain UCD-JR1]
MRSELEGASLDKVENNYLYVRKNVNLRFGLSSKGDFRKTNANGRGYQPMIHHVKNVKISQEGEQVKIILSFEKGGDRIFL
YKFSEKES
MRSELEGASLDKVENNYLYVRKNVNLRFGLSSKGDFRKTNANGRGYQPMIHHVKNVKISQEGEQVKIILSFEKGGDRIFL
YKFSEKES
Nucleotide
Download Length: 267 bp
>NTDB_id=918087 VNN35_RS07335 WP_255566449.1 1472624..1472890(+) (comYF) [Lactococcus petauri strain UCD-JR1]
CTGAGAAGCGAACTTGAGGGAGCAAGCTTAGATAAGGTGGAAAATAACTATCTTTATGTCCGCAAAAATGTCAATCTAAG
ATTTGGACTTTCCTCCAAAGGAGATTTTCGGAAAACTAATGCTAATGGGCGAGGTTATCAACCCATGATCCATCATGTAA
AAAATGTTAAAATCAGCCAGGAGGGAGAGCAGGTAAAAATTATCTTGTCTTTTGAAAAAGGAGGAGACCGCATATTTCTT
TACAAGTTCTCAGAAAAAGAAAGTTAA
CTGAGAAGCGAACTTGAGGGAGCAAGCTTAGATAAGGTGGAAAATAACTATCTTTATGTCCGCAAAAATGTCAATCTAAG
ATTTGGACTTTCCTCCAAAGGAGATTTTCGGAAAACTAATGCTAATGGGCGAGGTTATCAACCCATGATCCATCATGTAA
AAAATGTTAAAATCAGCCAGGAGGGAGAGCAGGTAAAAATTATCTTGTCTTTTGAAAAAGGAGGAGACCGCATATTTCTT
TACAAGTTCTCAGAAAAAGAAAGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYF | Streptococcus mutans UA140 |
51.724 |
98.864 |
0.511 |
| comYF | Streptococcus mutans UA159 |
50.575 |
98.864 |
0.5 |
| comGF | Lactococcus lactis subsp. cremoris KW2 |
50.588 |
96.591 |
0.489 |
| comGF/cglF | Streptococcus pneumoniae TIGR4 |
39.326 |
100 |
0.398 |
| comGF/cglF | Streptococcus pneumoniae D39 |
39.326 |
100 |
0.398 |
| comGF/cglF | Streptococcus pneumoniae Rx1 |
39.326 |
100 |
0.398 |
| comGF/cglF | Streptococcus pneumoniae R6 |
39.326 |
100 |
0.398 |
| comGF/cglF | Streptococcus mitis NCTC 12261 |
35.955 |
100 |
0.364 |