Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   AB1F71_RS09720 Genome accession   NZ_CP160386
Coordinates   1958720..1959313 (-) Length   197 a.a.
NCBI ID   WP_002262395.1    Uniprot ID   Q8CWW3
Organism   Streptococcus mutans strain UA159 ykuR deletion     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1953720..1964313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1F71_RS09690 (AB1F71_09690) - 1953984..1954196 (-) 213 WP_002262389.1 hypothetical protein -
  AB1F71_RS09695 (AB1F71_09695) - 1954323..1954748 (-) 426 WP_002262390.1 hypothetical protein -
  AB1F71_RS09700 (AB1F71_09700) spx 1954999..1955397 (-) 399 WP_002262391.1 transcriptional regulator Spx -
  AB1F71_RS09705 (AB1F71_09705) recA 1955482..1956633 (-) 1152 WP_002262392.1 recombinase RecA Machinery gene
  AB1F71_RS09710 (AB1F71_09710) cinA 1956673..1957929 (-) 1257 WP_002262393.1 competence/damage-inducible protein A Machinery gene
  AB1F71_RS09715 (AB1F71_09715) - 1958078..1958638 (-) 561 WP_002262394.1 DNA-3-methyladenine glycosylase I -
  AB1F71_RS09720 (AB1F71_09720) ruvA 1958720..1959313 (-) 594 WP_002262395.1 Holliday junction branch migration protein RuvA Machinery gene
  AB1F71_RS09725 (AB1F71_09725) hexB 1959496..1961451 (-) 1956 WP_002262396.1 DNA mismatch repair endonuclease MutL Machinery gene
  AB1F71_RS09730 (AB1F71_09730) - 1961676..1961954 (+) 279 Protein_1864 transposase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21896.11 Da        Isoelectric Point: 5.6313

>NTDB_id=918087 AB1F71_RS09720 WP_002262395.1 1958720..1959313(-) (ruvA) [Streptococcus mutans strain UA159 ykuR deletion]
MYDYIKGNLTKITAKYIVLETGGLGYVINVANPYSFSNQINQAIQIYIHHVVREDAHLLYGFHTEDEKAVFLNLISVSGI
GPTSALAIIAADDNEGLVKAIDHSDVNYLMKFPKIGKKTAQQMVLDLAGKFVDINEVSTDKSKVSTINNNQELEEAVEAL
LALGYKTNELKKIEKFFEGTTDTAENYIKSALKMLMK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=918087 AB1F71_RS09720 WP_002262395.1 1958720..1959313(-) (ruvA) [Streptococcus mutans strain UA159 ykuR deletion]
ATGTACGATTATATTAAAGGGAATTTAACCAAAATTACAGCTAAATATATTGTCTTAGAAACTGGCGGTTTGGGTTATGT
AATTAATGTTGCCAATCCTTATAGTTTTTCTAATCAGATAAATCAAGCTATTCAAATTTATATTCACCATGTTGTCCGTG
AAGATGCCCATCTTCTTTATGGTTTTCATACTGAGGATGAAAAGGCGGTTTTTCTTAATCTTATCTCTGTTTCAGGAATC
GGTCCAACTTCAGCATTAGCTATTATTGCGGCTGATGATAATGAAGGTTTGGTTAAAGCTATTGACCACAGTGATGTAAA
CTATTTGATGAAATTCCCTAAAATTGGGAAGAAAACAGCTCAACAAATGGTGCTTGATTTAGCAGGTAAATTTGTAGATA
TTAATGAAGTCTCAACCGATAAAAGCAAAGTGAGCACTATTAATAATAATCAAGAACTTGAAGAGGCGGTTGAAGCACTT
TTGGCTCTTGGTTACAAAACAAATGAACTTAAGAAGATAGAAAAATTTTTTGAAGGAACGACTGATACGGCAGAAAATTA
TATTAAATCTGCTCTAAAAATGTTGATGAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(153-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8CWW3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

72.081

100

0.721
  ruvA Streptococcus pneumoniae D39

72.081

100

0.721
  ruvA Streptococcus pneumoniae TIGR4

72.081

100

0.721
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.901

100

0.411