Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   VNN35_RS00685 Genome accession   NZ_CP141687
Coordinates   116895..118151 (-) Length   418 a.a.
NCBI ID   WP_338953540.1    Uniprot ID   -
Organism   Lactococcus petauri strain UCD-JR1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 111895..123151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN35_RS00655 (VNN35_00655) ald 112648..113754 (+) 1107 WP_206888834.1 alanine dehydrogenase -
  VNN35_RS00660 (VNN35_00660) - 113874..114833 (+) 960 WP_004257953.1 PhoH family protein -
  VNN35_RS00665 (VNN35_00665) - 114835..115308 (+) 474 WP_198494734.1 NUDIX hydrolase -
  VNN35_RS00670 (VNN35_00670) ybeY 115318..115806 (+) 489 WP_019292773.1 rRNA maturation RNase YbeY -
  VNN35_RS00675 (VNN35_00675) - 115790..116251 (+) 462 WP_019292772.1 diacylglycerol kinase family protein -
  VNN35_RS00680 (VNN35_00680) - 116254..116898 (-) 645 WP_206888836.1 ComF family protein -
  VNN35_RS00685 (VNN35_00685) comFA 116895..118151 (-) 1257 WP_338953540.1 DEAD/DEAH box helicase Machinery gene
  VNN35_RS00690 (VNN35_00690) - 118206..118829 (+) 624 WP_019292769.1 YigZ family protein -
  VNN35_RS00695 (VNN35_00695) - 118842..119864 (+) 1023 WP_019293557.1 DUF475 domain-containing protein -
  VNN35_RS00700 (VNN35_00700) - 119899..120921 (-) 1023 WP_034999659.1 alpha/beta hydrolase -
  VNN35_RS00705 (VNN35_00705) - 121239..122018 (+) 780 WP_019292766.1 formate/nitrite transporter family protein -
  VNN35_RS00710 (VNN35_00710) glyQ 122032..123000 (+) 969 WP_165719545.1 glycine--tRNA ligase subunit alpha -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 48040.91 Da        Isoelectric Point: 10.1835

>NTDB_id=918065 VNN35_RS00685 WP_338953540.1 116895..118151(-) (comFA) [Lactococcus petauri strain UCD-JR1]
MNELYGRLLLQKELSKIPDKATLFDSMHDISRTVIMCNRCGKKSKKKEVLLPVGAYYCPHCIQMGRVRSDEKLYHLPQED
FLAASFLNWQGKLTAPQQYISDTLVKLHQQQKTVLVQAVTGAGKTEMIYQMIDNTLKKGKAVGLTSPRIDVCLELYYRLK
RDFSCPISLLHGKSEKYSRSPLVIATTHQLMRFRHAFDLVILDEVDAFPFPDNDMLSFALTQARKPSSSLIYLTATTTNN
LEKQVKLGQIEKLQLPRRFHGFPLVLPQFFWQSKFYKMVKKQRESGFPLLIFVPEIRLGEKLNQDLQSSFPHEEIAFVAS
TSLERLEAVERFRQGNISILVSTTILERGVTFPKVDVFVFQSHHHNFTRSSLIQIARRVGRSTERPDGKVFFFHLGKTTA
MLEAYKNIRNMNKAGGFQ

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=918065 VNN35_RS00685 WP_338953540.1 116895..118151(-) (comFA) [Lactococcus petauri strain UCD-JR1]
ATGAATGAATTATATGGTAGACTCCTTTTACAAAAAGAATTGTCGAAAATCCCAGACAAAGCAACACTTTTTGATAGTAT
GCACGATATTTCAAGAACAGTGATTATGTGCAATCGCTGTGGCAAAAAAAGTAAGAAAAAAGAGGTCCTACTCCCCGTTG
GTGCTTATTATTGTCCCCATTGTATTCAGATGGGACGTGTTCGCTCGGATGAAAAACTTTATCATCTTCCTCAGGAGGAT
TTTTTAGCAGCTTCTTTTCTAAACTGGCAGGGAAAACTCACAGCCCCTCAGCAATATATATCTGATACTCTAGTCAAATT
ACATCAGCAACAAAAAACGGTGCTGGTGCAGGCTGTCACGGGTGCAGGAAAAACTGAAATGATTTATCAGATGATTGATA
ACACCCTTAAAAAAGGAAAAGCTGTAGGTTTAACTAGTCCTCGTATTGATGTCTGTCTAGAACTCTACTATCGCTTAAAG
CGAGATTTTTCTTGTCCCATCTCGCTTTTACACGGAAAAAGTGAGAAATACAGCCGCTCGCCACTCGTAATTGCGACGAC
ACATCAGCTTATGCGTTTTCGTCATGCCTTTGACTTAGTCATTCTTGATGAGGTTGATGCTTTTCCATTTCCAGATAATG
ACATGCTCTCTTTTGCACTGACTCAAGCTCGTAAACCTTCTTCAAGCTTGATTTATCTTACTGCAACAACCACCAATAAT
TTGGAAAAACAAGTCAAGTTGGGGCAAATCGAAAAGTTACAACTTCCCCGACGTTTTCATGGTTTTCCATTGGTACTCCC
ACAATTTTTTTGGCAGAGCAAGTTTTATAAAATGGTCAAAAAACAACGCGAATCTGGTTTCCCATTACTTATCTTTGTCC
CTGAAATAAGACTGGGAGAAAAACTGAACCAAGACTTACAGAGTAGTTTTCCTCATGAAGAAATTGCCTTTGTTGCTTCA
ACGAGTCTTGAACGCTTAGAGGCTGTGGAACGTTTTCGCCAGGGCAATATTTCTATCCTTGTCTCAACGACTATTTTAGA
ACGTGGTGTAACTTTTCCTAAGGTTGACGTTTTTGTATTTCAAAGTCATCACCATAATTTCACAAGATCAAGCCTCATCC
AAATTGCTAGACGAGTAGGTCGAAGTACCGAAAGACCTGACGGCAAAGTGTTTTTCTTTCATTTAGGAAAAACAACAGCA
ATGTTGGAAGCTTATAAAAATATCAGAAATATGAATAAGGCAGGAGGTTTCCAATGA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(97-236)

Helicase conserved C-terminal domain (Helicase_C)

(274-382)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Lactococcus lactis subsp. cremoris KW2

56.888

93.78

0.533
  comFA/cflA Streptococcus pneumoniae TIGR4

50.585

100

0.517
  comFA/cflA Streptococcus pneumoniae Rx1

50.585

100

0.517
  comFA/cflA Streptococcus pneumoniae D39

50.585

100

0.517
  comFA/cflA Streptococcus pneumoniae R6

50.585

100

0.517
  comFA/cflA Streptococcus mitis SK321

50.117

100

0.512
  comFA/cflA Streptococcus mitis NCTC 12261

49.18

100

0.502
  comFA Bacillus subtilis subsp. subtilis str. 168

37.215

100

0.39
  comFA Latilactobacillus sakei subsp. sakei 23K

38.791

94.976

0.368