Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   AB1F71_RS08545 Genome accession   NZ_CP160386
Coordinates   1728408..1730423 (-) Length   671 a.a.
NCBI ID   WP_002263465.1    Uniprot ID   Q8DSF5
Organism   Streptococcus mutans strain UA159 ykuR deletion     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1723408..1735423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1F71_RS08520 (AB1F71_08520) - 1724296..1724832 (+) 537 WP_002263470.1 biotin transporter BioY -
  AB1F71_RS08525 (AB1F71_08525) - 1724930..1725379 (+) 450 WP_002263469.1 universal stress protein -
  AB1F71_RS08530 (AB1F71_08530) - 1725657..1727042 (-) 1386 WP_002263468.1 Cof-type HAD-IIB family hydrolase -
  AB1F71_RS08535 (AB1F71_08535) - 1727115..1728074 (+) 960 WP_002263467.1 asparaginase -
  AB1F71_RS08540 (AB1F71_08540) - 1728101..1728265 (+) 165 WP_002263466.1 hypothetical protein -
  AB1F71_RS08545 (AB1F71_08545) recG/mmsA 1728408..1730423 (-) 2016 WP_002263465.1 ATP-dependent DNA helicase RecG Machinery gene
  AB1F71_RS08550 (AB1F71_08550) alr 1730596..1731711 (-) 1116 WP_002263464.1 alanine racemase -
  AB1F71_RS08555 (AB1F71_08555) acpS 1731708..1732067 (-) 360 WP_002263463.1 holo-ACP synthase -
  AB1F71_RS08560 (AB1F71_08560) - 1732337..1733371 (-) 1035 WP_002263828.1 3-deoxy-7-phosphoheptulonate synthase -

Sequence

Protein


Download         Length: 671 a.a.        Molecular weight: 75373.31 Da        Isoelectric Point: 8.4749

>NTDB_id=918052 AB1F71_RS08545 WP_002263465.1 1728408..1730423(-) (recG/mmsA) [Streptococcus mutans strain UA159 ykuR deletion]
MDLQSSLAVLKGLGPKSAEKFHRLGIYTIEDLLLYYPFRYEDFKAKSVLDLLDGEKAVVTGKVVTPANVQYYGFKRNRLS
FKIKQDEAVIAVSFFNQPYLQDKVELDQDIAIFGKWDQKKSALTGMKILAQVTDDMQPVYHVAQGISQSALIKAIQSAFE
AGYLRFLSENLPQVLLNKYRLLDRQTATRAMHFPKDLEEYKQALRRIKFEELFYFQLNLQVLKANNKSESNGLLITYDHD
QVVAKIAALPFALTNAQKRSLDEILADMKSGAHMNRLLQGDVGSGKTVIASLAMYAAYSAGLQSALMVPTEILAEQHYES
LRTLFPELSIALLTSGMKAAVRRSALAAIADGSVDMIVGTHALIQEGVDYHKLGLVITDEQHRFGVKQRRLFREKGENPD
VLMMTATPIPRTLAITAFGEMDVSLIDELPAGRKPIVTRWVKHEQLDKVLPWVKEQLKKKEQVYVISPLIEESETLDLKN
AVALEEDLKAYFASSANIALMHGRMKNDEKEAIMQAFKKGSIDILVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLR
GRVGRGEKRSYAILVANPKTDTGKNRMRIMTKTTDGFVLAEEDLKMRGSGEIFGVRQSGIPEFQVADIVEDYPILEEARK
VASQIVAVKDWCQDKRWAILVQNLKQKEILD

Nucleotide


Download         Length: 2016 bp        

>NTDB_id=918052 AB1F71_RS08545 WP_002263465.1 1728408..1730423(-) (recG/mmsA) [Streptococcus mutans strain UA159 ykuR deletion]
ATGGACTTACAGTCATCACTTGCGGTTTTAAAGGGATTAGGTCCTAAGTCTGCAGAAAAATTTCATAGATTAGGCATTTA
TACCATTGAGGACTTGTTGCTTTACTATCCTTTTCGTTATGAGGACTTTAAGGCAAAATCTGTTTTAGATTTGTTAGATG
GTGAAAAAGCTGTTGTTACTGGAAAAGTAGTGACCCCAGCTAATGTACAATATTATGGGTTTAAACGCAATCGTCTATCT
TTTAAAATAAAACAAGATGAAGCTGTTATTGCTGTTTCTTTTTTTAATCAGCCTTATTTACAAGATAAGGTGGAGCTTGA
TCAGGATATTGCTATTTTTGGAAAATGGGATCAAAAGAAGTCAGCTCTTACGGGCATGAAGATTTTGGCTCAAGTGACAG
ATGATATGCAGCCGGTTTATCATGTGGCACAAGGAATATCACAGTCAGCTCTGATTAAGGCTATTCAATCCGCTTTTGAA
GCTGGTTATTTACGCTTTTTATCTGAAAATTTACCGCAGGTTTTGCTTAATAAATATCGTTTGTTAGACAGACAAACAGC
TACGCGGGCTATGCATTTTCCGAAAGATTTGGAAGAATATAAACAAGCCTTGCGCCGCATCAAATTTGAGGAACTCTTTT
ATTTTCAACTCAATTTGCAGGTTCTTAAAGCAAATAATAAATCAGAATCAAATGGTCTGCTTATTACTTATGATCACGAT
CAAGTGGTTGCTAAAATAGCTGCTCTGCCTTTTGCCTTGACGAATGCCCAAAAAAGGAGCTTAGACGAAATTCTGGCAGA
TATGAAGTCTGGCGCTCATATGAATCGGCTTTTACAGGGAGATGTCGGTTCTGGTAAGACAGTCATTGCCAGTCTTGCTA
TGTATGCAGCCTATAGTGCAGGTCTGCAGTCTGCTTTGATGGTTCCTACGGAAATTTTAGCGGAACAACATTATGAAAGT
TTAAGGACTTTATTTCCTGAACTTTCAATTGCACTTTTGACGTCTGGGATGAAGGCTGCTGTAAGACGTTCAGCCTTAGC
AGCTATCGCTGATGGCTCAGTAGATATGATTGTTGGTACCCACGCTCTCATTCAAGAAGGTGTTGATTACCATAAATTAG
GCTTAGTTATTACGGATGAACAACATCGATTTGGTGTTAAGCAAAGGCGACTGTTTAGGGAAAAGGGAGAGAATCCTGAT
GTTCTCATGATGACAGCCACACCTATTCCTAGAACCTTGGCTATTACTGCCTTTGGCGAAATGGATGTTTCTCTTATTGA
TGAATTGCCAGCAGGTCGCAAACCGATTGTTACACGTTGGGTTAAGCATGAACAGTTAGATAAAGTTCTGCCTTGGGTTA
AAGAACAGCTCAAGAAAAAAGAACAAGTCTATGTCATTTCACCTTTGATTGAGGAGTCTGAAACCTTGGATTTGAAAAAT
GCTGTCGCTTTAGAAGAAGACTTAAAAGCTTATTTTGCGTCGTCTGCTAATATTGCTCTTATGCATGGTCGTATGAAAAA
TGATGAAAAAGAAGCCATTATGCAGGCTTTCAAAAAGGGCAGTATTGATATTCTGGTTTCAACAACTGTCATTGAAGTTG
GGGTCAATGTACCTAATGCTACGATTATGATTATTATGGATGCCGATCGTTTTGGTCTTAGTCAATTGCATCAATTACGA
GGACGTGTAGGACGTGGAGAAAAGCGATCCTATGCCATTTTAGTTGCTAATCCTAAAACGGATACTGGGAAAAATCGCAT
GCGCATTATGACAAAAACAACAGATGGCTTTGTTTTGGCTGAAGAAGATTTAAAAATGCGTGGTTCAGGAGAAATTTTTG
GTGTTCGTCAATCTGGCATTCCTGAATTTCAGGTGGCTGATATTGTGGAAGATTACCCTATTTTAGAAGAGGCTAGAAAA
GTGGCTAGTCAAATTGTGGCCGTTAAAGATTGGTGTCAAGATAAACGATGGGCAATTCTTGTGCAAAATCTTAAGCAAAA
AGAAATTTTGGATTAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(450-566)

DEAD/DEAH box helicase (DEAD)

(254-409)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(593-666)

RecG wedge domain (RecG_wedge)

(10-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DSF5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

69.598

100

0.696
  recG/mmsA Streptococcus pneumoniae R36A

69.598

100

0.696
  recG Bacillus subtilis subsp. subtilis str. 168

49.48

100

0.496
  recG Neisseria meningitidis strain C311

39.663

97.317

0.386