Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   QRP18_RS10690 Genome accession   NZ_CP160382
Coordinates   2316235..2318265 (-) Length   676 a.a.
NCBI ID   WP_005494496.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain ST110-8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2311235..2323265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRP18_RS10665 (QRP18_10665) moaB 2311331..2311843 (-) 513 WP_005461494.1 molybdenum cofactor biosynthesis protein B -
  QRP18_RS10670 (QRP18_10670) moaA 2311946..2312935 (-) 990 WP_110177400.1 GTP 3',8-cyclase MoaA -
  QRP18_RS10675 (QRP18_10675) - 2313231..2314124 (+) 894 WP_005494500.1 YvcK family protein -
  QRP18_RS10680 (QRP18_10680) luxU 2314201..2314539 (-) 339 WP_020838698.1 quorum-sensing phosphorelay protein LuxU -
  QRP18_RS10685 (QRP18_10685) luxO 2314542..2315945 (-) 1404 WP_005461534.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  QRP18_RS10690 (QRP18_10690) uvrB 2316235..2318265 (-) 2031 WP_005494496.1 excinuclease ABC subunit UvrB Machinery gene
  QRP18_RS10700 (QRP18_10700) rsxA 2319257..2319835 (+) 579 WP_005380762.1 electron transport complex subunit RsxA -
  QRP18_RS10705 (QRP18_10705) rsxB 2319839..2320435 (+) 597 WP_005480813.1 electron transport complex subunit RsxB -
  QRP18_RS10710 (QRP18_10710) rsxC 2320444..2322813 (+) 2370 WP_110177399.1 electron transport complex subunit RsxC -

Sequence

Protein


Download         Length: 676 a.a.        Molecular weight: 77042.72 Da        Isoelectric Point: 4.8615

>NTDB_id=917818 QRP18_RS10690 WP_005494496.1 2316235..2318265(-) (uvrB) [Vibrio parahaemolyticus strain ST110-8]
MSKVYELVSEYQPSGDQPTAIKQLLEGLDAGLAHQTLLGVTGSGKTFTLANVIAQAQRPAILLAPNKTLAAQLYGEMKSF
FPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRLSATKALLERKDAIIVASVSAIYGLGDPESYLQMMLH
LRRGDVIDQRDMLRRLAELQYSRNDVAFERGQFRVRGEVIDIFPAESDQDAVRVEMFDDEVDCISVFDPLTGVVKQRDLP
RYTIYPKTHYVTPRDRILEAIESIKVELEVRKKQLLENNKLIEEQRISQRTQFDIEMMNELGFCSGIENYSRYLSGRSEG
EPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETLVEFGFRLPSALDNRPLKFEEFESLAPQTIFVSATPGNY
ELEKSAGEIADQVVRPTGLLDPILEVRPVATQVDDLLSEIRIRAAKEERVLVTTLTKRMAEDLTEYLHEHDVRVRYLHSD
IDTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNIEGKAILYADSITK
SMKKAMDETNRRREKQQAYNEKMGITPQALKRNIKDIMELGDITKSKRQRNTKQVPLSKVAEPSQTYEVMSPQQLEKEIS
RLEAAMYQHAQDLEFELAAEKRDEIEKLRAQFIANS

Nucleotide


Download         Length: 2031 bp        

>NTDB_id=917818 QRP18_RS10690 WP_005494496.1 2316235..2318265(-) (uvrB) [Vibrio parahaemolyticus strain ST110-8]
ATGAGTAAAGTTTATGAACTGGTCTCTGAGTATCAACCGTCAGGTGACCAGCCAACCGCGATTAAGCAATTATTAGAAGG
CTTAGATGCGGGGTTGGCGCATCAGACGCTTTTAGGTGTAACGGGTTCTGGTAAAACGTTCACGCTAGCGAATGTGATTG
CTCAAGCACAGCGCCCTGCAATTTTACTGGCGCCAAATAAAACCCTCGCGGCTCAGTTGTATGGGGAAATGAAATCGTTC
TTTCCTAACAATGCGGTCGAGTATTTTGTGTCGTACTACGACTACTATCAACCAGAAGCGTACGTGCCTACAACTGACAC
CTTTATTGAAAAAGATGCGTCAGTGAACGCTCACATTGAGCAAATGCGTTTATCTGCCACCAAAGCTTTACTCGAACGAA
AAGACGCCATCATCGTCGCTTCTGTCTCGGCCATTTATGGTTTGGGTGATCCCGAGTCGTATTTACAGATGATGCTGCAC
TTACGCCGTGGTGACGTGATCGATCAGCGTGACATGCTTCGTCGCTTAGCGGAACTTCAATACTCGCGTAATGATGTCGC
TTTTGAACGCGGTCAGTTCCGTGTTCGCGGCGAAGTGATCGACATATTCCCAGCTGAGTCTGACCAAGATGCTGTCCGTG
TTGAAATGTTTGATGATGAAGTGGATTGTATCAGTGTGTTTGACCCATTGACGGGTGTCGTGAAACAAAGAGATTTGCCG
CGTTACACGATTTACCCGAAAACGCACTACGTGACGCCCCGCGACCGTATTCTCGAAGCGATAGAAAGCATCAAAGTTGA
GCTCGAAGTACGCAAGAAACAATTACTAGAGAATAACAAGCTAATAGAAGAGCAGCGCATTAGCCAGCGTACACAGTTTG
ATATCGAGATGATGAATGAGCTCGGTTTCTGCTCTGGTATCGAAAACTACTCACGTTATCTCAGTGGTCGTTCTGAGGGT
GAGCCGCCTCCAACTTTGTTCGATTACTTGCCTCATGATGGTTTGCTTATCATCGATGAGTCCCACGTGACTGTACCGCA
GATTGGTGCGATGTATAAAGGTGACCGTTCACGTAAAGAAACTCTGGTTGAGTTTGGTTTCCGCTTACCATCGGCGTTGG
ACAACCGCCCTCTAAAATTTGAAGAATTTGAATCTCTTGCTCCGCAAACTATTTTCGTCTCGGCGACGCCGGGCAATTAT
GAGCTAGAGAAATCGGCAGGTGAAATTGCGGATCAAGTCGTGCGTCCTACCGGCTTGCTGGATCCAATACTCGAAGTTCG
ACCAGTCGCGACTCAGGTCGATGATCTATTGTCTGAAATTCGTATTCGTGCCGCCAAAGAGGAACGTGTTCTTGTTACGA
CTCTGACCAAACGAATGGCGGAAGATTTAACGGAATATCTGCATGAACATGATGTTCGTGTTCGATATCTTCACTCCGAC
ATCGACACGGTAGAGCGCGTCGAGATCATTCGAGATTTGCGCTTAGGTGAGTTCGATGTCTTAGTGGGTATCAACTTGCT
TCGAGAAGGTTTGGATATGCCGGAAGTCTCGCTGGTGGCAATTTTGGATGCTGACAAAGAAGGTTTCTTGCGTTCAGAAC
GTTCACTCATTCAGACGATAGGTCGTGCTGCTAGAAACATTGAGGGTAAAGCGATTCTCTATGCGGATAGTATTACAAAA
TCGATGAAAAAAGCGATGGATGAAACCAATCGTCGTCGTGAGAAGCAGCAAGCGTACAACGAGAAAATGGGCATTACGCC
GCAAGCACTAAAACGTAATATCAAGGATATTATGGAATTGGGCGACATTACTAAGTCCAAACGTCAACGCAATACTAAGC
AAGTGCCACTGTCTAAAGTGGCTGAACCATCTCAAACTTACGAAGTGATGTCTCCACAACAATTGGAGAAGGAAATCAGT
CGACTAGAAGCGGCGATGTACCAACATGCTCAGGATCTGGAATTCGAGCTTGCGGCTGAGAAGCGTGATGAAATAGAAAA
ACTGCGTGCGCAATTCATCGCGAATAGCTAG

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(553-594)

UvrB interaction domain (UvrB_inter)

(159-250)

Helicase conserved C-terminal domain (Helicase_C)

(440-545)

Type III restriction enzyme, res subunit (ResIII)

(13-129)

UvrB/uvrC motif (UVR)

(636-671)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

55.856

98.521

0.55
  uvrB Streptococcus pneumoniae R6

55.856

98.521

0.55
  uvrB Streptococcus pneumoniae D39

55.856

98.521

0.55