Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   QRP18_RS09835 Genome accession   NZ_CP160382
Coordinates   2127810..2128454 (-) Length   214 a.a.
NCBI ID   WP_005386783.1    Uniprot ID   Q87NC3
Organism   Vibrio parahaemolyticus strain ST110-8     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2122810..2133454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRP18_RS09825 (QRP18_09825) pgsA 2125372..2125929 (-) 558 WP_005494716.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QRP18_RS09830 (QRP18_09830) uvrC 2125976..2127808 (-) 1833 WP_005494715.1 excinuclease ABC subunit UvrC Machinery gene
  QRP18_RS09835 (QRP18_09835) letA 2127810..2128454 (-) 645 WP_005386783.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  QRP18_RS09840 (QRP18_09840) - 2128954..2131317 (+) 2364 WP_110177468.1 DNA polymerase II -
  QRP18_RS09845 (QRP18_09845) - 2131314..2132081 (-) 768 WP_045588017.1 nucleotidyltransferase domain-containing protein -
  QRP18_RS09850 (QRP18_09850) yeiP 2132268..2132834 (+) 567 WP_005465079.1 elongation factor P-like protein YeiP -
  QRP18_RS09855 (QRP18_09855) - 2132837..2133157 (+) 321 WP_005465080.1 HI1450 family dsDNA-mimic protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23765.32 Da        Isoelectric Point: 5.6509

>NTDB_id=917812 QRP18_RS09835 WP_005386783.1 2127810..2128454(-) (letA) [Vibrio parahaemolyticus strain ST110-8]
MINVFLVDDHELVRTGIRRIIEDVRGMNVAGEADSGEDAVKWCRSNHADVVLMDMNMPGIGGLEATKKILRVNPDVKIIV
LTVHTENPFPTKVMQAGASGYLTKGAGPDEMVNAIRVVNSGQRYISPEIAQQMALSQFSPASENPFKDLSERELQIMLMI
TKGQKVTDISEQLNLSPKTVNSYRYRLFSKLDINGDVELTHLAIRHGMLDTETL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=917812 QRP18_RS09835 WP_005386783.1 2127810..2128454(-) (letA) [Vibrio parahaemolyticus strain ST110-8]
TTGATTAATGTTTTCCTTGTAGATGATCACGAGCTGGTTCGCACAGGGATACGACGTATTATTGAAGACGTCCGTGGAAT
GAACGTAGCAGGAGAAGCTGACAGCGGTGAAGATGCAGTGAAATGGTGTCGCAGTAATCATGCTGACGTCGTTTTAATGG
ACATGAACATGCCTGGGATTGGCGGCTTGGAAGCCACCAAGAAAATTCTTCGCGTGAATCCAGATGTGAAAATCATCGTA
CTAACCGTTCATACGGAAAATCCGTTTCCAACCAAAGTGATGCAGGCGGGTGCTTCTGGTTATTTAACCAAAGGTGCAGG
GCCGGATGAAATGGTAAATGCAATTCGTGTGGTCAATAGTGGGCAGCGTTACATCTCTCCAGAGATAGCGCAGCAAATGG
CATTGAGCCAGTTCTCACCAGCCTCTGAAAACCCATTTAAAGATTTGTCCGAACGTGAACTGCAAATCATGCTTATGATC
ACGAAAGGTCAGAAAGTAACGGATATTTCTGAGCAACTTAACTTAAGTCCAAAGACAGTCAACAGCTACCGCTATCGACT
GTTTAGCAAGCTGGACATTAATGGTGACGTTGAGTTAACACACTTAGCGATTCGCCACGGAATGCTGGACACCGAGACCC
TTTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(149-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87NC3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

50.952

98.131

0.5
  letA Legionella pneumophila strain ERS1305867

50.952

98.131

0.5