Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   QRP18_RS09830 Genome accession   NZ_CP160382
Coordinates   2125976..2127808 (-) Length   610 a.a.
NCBI ID   WP_005494715.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain ST110-8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2120976..2132808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRP18_RS09825 (QRP18_09825) pgsA 2125372..2125929 (-) 558 WP_005494716.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QRP18_RS09830 (QRP18_09830) uvrC 2125976..2127808 (-) 1833 WP_005494715.1 excinuclease ABC subunit UvrC Machinery gene
  QRP18_RS09835 (QRP18_09835) letA 2127810..2128454 (-) 645 WP_005386783.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  QRP18_RS09840 (QRP18_09840) - 2128954..2131317 (+) 2364 WP_110177468.1 DNA polymerase II -
  QRP18_RS09845 (QRP18_09845) - 2131314..2132081 (-) 768 WP_045588017.1 nucleotidyltransferase domain-containing protein -

Sequence

Protein


Download         Length: 610 a.a.        Molecular weight: 69248.43 Da        Isoelectric Point: 9.5525

>NTDB_id=917811 QRP18_RS09830 WP_005494715.1 2125976..2127808(-) (uvrC) [Vibrio parahaemolyticus strain ST110-8]
MNPPFDSASFLKTVTHQPGVYRMYNADAVVIYVGKAKDLQKRLSSYFRKKVDSEKTRALVSNIAKIDVTVTHTETEALIL
EHNYIKQYLPKYNVLLRDDKSYPYIFISGHKHPRLSMHRGAKKRKGEYFGPYPDSGAVRETLHLLQKIFPVRQCEDTVYS
NRTRPCLMYQIGRCAGPCVSSIISDEEYAELVGFVRLFLQGKDQQVLKQLIEKMEVASQQLRFEDAAKFRDQIQAIRRVQ
EQQYVSEDSMDDMDVLGFAQENGIACIHILMIRQGKVLGSRSHFPKIPQNTSQQEVFDSFLTQYYLSHNEARTIPSRIIL
NQELADDLEPIQKALSEVAGRKVHFHTSPTGARGRYLKLSNTNALTAITTKINHKMTINQRFKALRETLGMESIMRMECF
DISHTMGESTIASCVVFNNEGPVKQEYRRYNITGITGGDDYAAMGQALERRYSKQLDVEKIPDIIFIDGGKGQLNRAHEI
IAQYWGDWPKRPIMIGIAKGVTRKPGLETLITVDGEEFNLPSDAPALHLIQHIRDESHNHAIAGHRAKRGKTRRTSALEG
IEGVGPKRRQALLKYMGGLQELKRASVEEIAKVPGISHSLAEIIFQALKQ

Nucleotide


Download         Length: 1833 bp        

>NTDB_id=917811 QRP18_RS09830 WP_005494715.1 2125976..2127808(-) (uvrC) [Vibrio parahaemolyticus strain ST110-8]
GTGAATCCTCCTTTCGATTCGGCTTCCTTTCTCAAGACAGTAACTCATCAGCCCGGCGTGTACCGCATGTACAACGCCGA
TGCTGTTGTTATTTACGTCGGTAAAGCCAAAGATCTTCAAAAACGCCTTTCTAGTTACTTTCGCAAAAAAGTCGACAGTG
AAAAAACACGCGCTTTGGTGAGCAATATTGCCAAAATAGATGTCACGGTGACGCATACCGAGACAGAAGCGCTGATTCTT
GAACACAATTACATCAAGCAGTATTTACCGAAATACAACGTGCTTCTGCGTGATGATAAATCGTACCCTTATATATTCAT
TAGTGGTCATAAACATCCGAGATTGTCCATGCACCGTGGGGCCAAGAAGCGTAAAGGCGAGTATTTTGGTCCTTACCCTG
ACTCAGGGGCGGTACGAGAAACGCTGCACTTGCTGCAAAAAATATTTCCTGTTAGACAGTGTGAAGATACGGTTTACTCC
AATCGAACGCGCCCTTGCTTGATGTATCAAATTGGTCGTTGCGCTGGCCCGTGTGTGAGCTCGATTATCTCAGATGAAGA
GTATGCAGAGCTGGTGGGTTTCGTCCGTCTATTTCTGCAAGGTAAAGATCAGCAAGTACTGAAGCAGTTGATAGAGAAAA
TGGAGGTTGCAAGTCAGCAACTTCGGTTTGAAGACGCGGCAAAGTTTCGTGATCAGATACAAGCGATAAGACGAGTCCAA
GAACAGCAATATGTATCGGAAGACAGCATGGATGATATGGATGTGCTGGGTTTTGCGCAAGAGAACGGCATTGCTTGCAT
CCACATATTGATGATTCGTCAGGGTAAAGTGTTAGGCAGTCGCAGTCATTTCCCTAAGATTCCTCAAAACACGAGCCAAC
AAGAGGTATTCGATAGCTTTTTGACTCAGTACTACCTGAGCCACAATGAGGCGCGAACAATCCCATCTCGAATAATACTG
AACCAAGAGTTGGCCGACGATCTCGAACCCATTCAAAAAGCACTGAGTGAAGTCGCAGGGCGTAAGGTTCATTTCCATAC
TTCTCCGACTGGTGCGAGAGGGAGATATCTTAAGCTGTCTAATACCAATGCACTTACTGCCATCACGACAAAAATCAACC
ATAAGATGACGATCAACCAACGTTTCAAAGCACTTCGCGAGACGCTGGGAATGGAGTCTATTATGAGGATGGAGTGTTTT
GATATTTCCCATACGATGGGCGAGAGCACTATCGCATCATGTGTGGTCTTCAACAACGAAGGTCCGGTAAAGCAAGAATA
CCGACGCTATAACATTACTGGAATCACGGGTGGCGATGATTATGCAGCGATGGGGCAGGCGTTAGAGCGGCGCTACTCAA
AGCAGTTGGACGTAGAAAAAATCCCTGACATCATCTTTATTGATGGTGGTAAAGGTCAGTTAAATCGTGCGCATGAAATC
ATCGCCCAGTATTGGGGAGATTGGCCTAAGCGACCAATCATGATTGGTATTGCCAAAGGTGTAACACGTAAACCTGGCCT
TGAAACCTTAATTACGGTTGATGGCGAAGAGTTCAACTTACCTAGTGACGCTCCAGCGCTACACTTGATTCAACATATTC
GCGATGAGAGTCATAATCATGCGATTGCGGGTCACAGAGCGAAACGTGGTAAAACTCGACGTACAAGCGCGTTGGAGGGG
ATTGAAGGTGTTGGGCCAAAACGACGCCAAGCTTTATTGAAATACATGGGTGGATTGCAGGAACTTAAGCGTGCAAGTGT
TGAAGAAATCGCCAAAGTACCGGGAATTAGTCACTCTTTAGCAGAAATTATTTTCCAAGCATTGAAACAATAA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(205-238)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(387-542)

GIY-YIG catalytic domain (GIY-YIG)

(18-93)

Helix-hairpin-helix domain (HHH_5)

(558-609)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

36.244

99.508

0.361