Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   OCV20_RS01310 Genome accession   NZ_AP025470
Coordinates   293700..294332 (-) Length   210 a.a.
NCBI ID   WP_004729651.1    Uniprot ID   A0AAN0LME0
Organism   Vibrio coralliirubri strain DSM 27495     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 288700..299332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV20_RS01295 astA 290002..291021 (+) 1020 WP_048612355.1 arginine N-succinyltransferase -
  OCV20_RS01300 astD 291061..292518 (+) 1458 WP_050619816.1 succinylglutamate-semialdehyde dehydrogenase -
  OCV20_RS01305 - 292732..293523 (+) 792 WP_086774519.1 DUF1338 domain-containing protein -
  OCV20_RS01310 crp 293700..294332 (-) 633 WP_004729651.1 cAMP-activated global transcriptional regulator CRP Regulator
  OCV20_RS01315 - 294572..295441 (-) 870 WP_010435210.1 phosphoribulokinase -
  OCV20_RS01320 - 295519..295731 (-) 213 WP_010435208.1 YheU family protein -
  OCV20_RS01325 - 295827..296819 (-) 993 WP_086774518.1 hydrolase -
  OCV20_RS01330 - 297026..297496 (-) 471 WP_048605369.1 TIGR02444 family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23623.39 Da        Isoelectric Point: 7.4009

>NTDB_id=91774 OCV20_RS01310 WP_004729651.1 293700..294332(-) (crp) [Vibrio coralliirubri strain DSM 27495]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMANRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=91774 OCV20_RS01310 WP_004729651.1 293700..294332(-) (crp) [Vibrio coralliirubri strain DSM 27495]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACATTAGAGTGGTTCCTTTCACACTGTCATATTCATAAGTACCCTTCAAA
AAGTACTTTGATTCATGCTGGTGAAAAGGCAGAAACCTTGTACTACATCGTTAAAGGTTCTGTGGCAGTTCTTATCAAAG
ACGAAGAAGGTAAGGAAATGATTCTTTCTTACCTAAACCAAGGCGACTTCATCGGTGAGCTTGGCTTGTTCGAAGAAGAC
CAAGAGCGTACAGCTTGGGTTCGTGCTAAATCTCCTTGTGAAGTAGCTGAGATTTCTTTCAAGAAATTCCGTCAACTTAT
CCAAGTGAACCCAGATATCCTAATGCGCCTTTCAGCGCAAATGGCAAACCGTCTACAAGTAACTAGCCAAAAGGTTGGTG
ACTTAGCGTTCCTTGACGTAACAGGTCGTATCGCTCAAACGCTACTAAACCTAGCGAAACAGCCAGATGCAATGACTCAC
CCTGACGGCATGCAAATCAAGATCACTCGTCAAGAGATTGGCCAGATTGTTGGTTGTTCTCGTGAGACAGTAGGTCGTAT
CTTGAAGATGCTAGAAGAGCAGAACCTAATTTCTGCACACGGTAAAACTATCGTGGTATACGGCACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment