Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   AAFM42_RS09305 Genome accession   NZ_CP160329
Coordinates   1799047..1801122 (+) Length   691 a.a.
NCBI ID   WP_053258672.1    Uniprot ID   A0ABY1T9K5
Organism   Pseudomonas fluorescens strain PFX1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1794047..1806122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFM42_RS09275 (AAFM42_09230) - 1794212..1794955 (+) 744 WP_053258668.1 hypothetical protein -
  AAFM42_RS09280 (AAFM42_09235) - 1794982..1795833 (-) 852 WP_053258669.1 SDR family oxidoreductase -
  AAFM42_RS09285 (AAFM42_09240) exbB 1795850..1796830 (+) 981 WP_053258670.1 tonB-system energizer ExbB -
  AAFM42_RS09290 (AAFM42_09245) exbD 1796863..1797288 (+) 426 WP_003195519.1 TonB system transport protein ExbD -
  AAFM42_RS09295 (AAFM42_09250) - 1797285..1798034 (+) 750 WP_053258671.1 energy transducer TonB -
  AAFM42_RS09300 (AAFM42_09255) - 1798035..1798955 (+) 921 WP_003213305.1 hydrogen peroxide-inducible genes activator -
  AAFM42_RS09305 (AAFM42_09260) recG 1799047..1801122 (+) 2076 WP_053258672.1 ATP-dependent DNA helicase RecG Machinery gene
  AAFM42_RS09310 (AAFM42_09265) - 1801143..1802543 (+) 1401 WP_053258673.1 aminoacyl-tRNA deacylase and HDOD domain-containing protein -
  AAFM42_RS09315 (AAFM42_09270) - 1802590..1802970 (-) 381 WP_053258816.1 hypothetical protein -
  AAFM42_RS09320 (AAFM42_09275) tagQ 1803021..1803947 (-) 927 WP_053258674.1 type VI secretion system-associated lipoprotein TagQ -
  AAFM42_RS09325 (AAFM42_09280) - 1803969..1805681 (-) 1713 WP_053258675.1 SUMF1/EgtB/PvdO family nonheme iron enzyme -

Sequence

Protein


Download         Length: 691 a.a.        Molecular weight: 76134.77 Da        Isoelectric Point: 7.0233

>NTDB_id=917707 AAFM42_RS09305 WP_053258672.1 1799047..1801122(+) (recG) [Pseudomonas fluorescens strain PFX1]
MTELSRVSVTALKGVGEAMAEKLAKVGLENLQDVLFHLPLRYQDRTRVVPIGQLRPGQDAVVEGTVSGADVVMGKRRSLV
VRLQDGTGGLSLRFYHFSNAQKEGLKRGTRVRCYGEARPGASGLEIYHPEYRAITGDEPPPVDTTLTPIYPLTEGLTQQR
LRQLCMQTLTLLGPKSLPDWLPLELARDYQLAPLDDAIRYLHNPPADADVDELALGHHWAQHRLAFEELLTHQLSQQRLR
ESMRSLRAPAMPKATRLPAQYLANLGFAPTGAQQRVGNEIAYDLSQHEPMLRLIQGDVGAGKTVVAALAALQALEAGYQV
ALMAPTEILAEQHFITFKRWLEPLGLEVAWLAGKLKGKVRAAALEQIAAGAPMVVGTHALFQDEVQFKNLALVIIDEQHR
FGVQQRLALRQKGVGGRMNPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVTDTRRVEVIERVRGACAE
GRQAYWVCTLIEESEELTCQAAETTYEDLTSALGELKVGLIHGRMKPAEKAAVMAEFKAGNLQLLVATTVIEVGVDVPNA
SLMIIENPERLGLAQLHQLRGRVGRGSAASHCVLLYHPPLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTG
LLQFKVADLMRDADLLPAVRDAAQALLERWPDHVSPLLDRWLRHGQQYGQV

Nucleotide


Download         Length: 2076 bp        

>NTDB_id=917707 AAFM42_RS09305 WP_053258672.1 1799047..1801122(+) (recG) [Pseudomonas fluorescens strain PFX1]
ATGACTGAGCTGTCGCGAGTGTCGGTGACGGCACTCAAAGGTGTCGGTGAAGCCATGGCCGAGAAGTTGGCCAAGGTCGG
CCTGGAGAACCTCCAGGATGTGCTGTTTCACTTGCCTCTGCGCTATCAGGACCGCACACGTGTGGTGCCCATCGGCCAAT
TGCGGCCGGGCCAGGACGCCGTGGTTGAAGGCACCGTCAGCGGTGCCGATGTGGTGATGGGCAAGCGCCGCAGCCTGGTC
GTACGGCTGCAGGACGGTACCGGCGGGCTGAGCCTGCGCTTCTATCACTTCAGCAATGCGCAAAAGGAAGGCCTCAAGCG
TGGCACCCGCGTGCGCTGTTACGGTGAAGCCCGGCCTGGCGCGTCGGGCCTGGAAATCTATCACCCGGAGTACCGCGCCA
TCACCGGCGACGAGCCGCCCCCGGTCGATACCACGCTCACGCCGATCTACCCACTGACCGAAGGCCTGACACAACAACGC
CTGCGCCAGCTGTGCATGCAGACCCTGACCCTGCTCGGCCCGAAAAGCCTGCCCGACTGGCTGCCCCTAGAACTGGCCCG
CGACTATCAACTGGCGCCGCTGGACGATGCGATTCGTTACCTGCACAACCCGCCAGCCGATGCCGATGTCGACGAACTCG
CGCTCGGTCATCACTGGGCACAACACCGCCTGGCCTTCGAAGAACTGCTGACCCACCAGCTGTCTCAGCAACGCCTGCGC
GAAAGCATGCGCTCCCTGCGTGCACCCGCGATGCCCAAGGCCACGCGCCTGCCGGCGCAATACCTGGCCAACCTCGGCTT
TGCGCCGACAGGCGCCCAGCAACGCGTGGGCAATGAAATTGCCTATGACCTCAGCCAGCACGAACCGATGTTGCGGCTGA
TCCAGGGCGACGTGGGCGCGGGCAAGACCGTGGTCGCCGCCCTCGCCGCCCTGCAAGCATTGGAAGCCGGTTACCAGGTG
GCGCTGATGGCGCCCACCGAGATCCTCGCCGAACAACATTTCATCACGTTCAAGCGCTGGCTCGAACCGCTCGGCCTGGA
AGTGGCATGGCTGGCGGGTAAGCTCAAGGGCAAGGTCCGCGCGGCGGCGCTGGAACAGATCGCCGCAGGTGCACCGATGG
TGGTGGGCACCCACGCGTTGTTCCAGGATGAAGTGCAGTTCAAGAACCTCGCACTGGTGATCATCGACGAACAGCATCGT
TTCGGCGTGCAGCAACGCCTGGCCTTACGCCAGAAAGGCGTGGGCGGACGCATGAACCCGCACCAACTGATCATGACGGC
CACGCCGATCCCGCGCACGCTGGCCATGAGCGCCTATGCCGATCTCGACACGTCAATTCTCGATGAGCTGCCGCCAGGCC
GCACACCGGTCAATACCGTGCTGGTGACCGACACGCGGCGTGTGGAGGTCATCGAGCGCGTGCGCGGTGCCTGCGCCGAA
GGGCGTCAGGCGTACTGGGTATGTACGCTGATTGAAGAGTCCGAAGAACTGACCTGCCAGGCTGCCGAAACCACCTATGA
AGACCTCACCAGTGCCTTGGGCGAGCTCAAGGTCGGGCTGATCCACGGCCGCATGAAACCTGCGGAAAAAGCCGCGGTGA
TGGCCGAATTCAAGGCCGGCAACCTGCAACTGCTGGTGGCCACCACCGTGATCGAGGTCGGTGTGGACGTGCCCAATGCC
AGCCTGATGATTATCGAAAACCCCGAGCGCCTGGGCCTCGCCCAACTGCACCAATTGCGCGGCCGTGTTGGCCGGGGCAG
CGCCGCCAGCCACTGCGTGCTGCTCTACCACCCGCCGCTGTCACAGATCGGCCGTCAGCGCCTGGGCATCATGCGCGAAA
CCAACGACGGCTTTGTCATCGCCGAAAAAGACCTTGAGCTGCGCGGCCCCGGCGAAATGCTCGGCACCCGCCAGACCGGC
CTGCTGCAATTCAAGGTCGCCGACCTGATGCGCGACGCCGACCTGCTGCCCGCCGTGCGTGATGCGGCGCAGGCACTGCT
TGAACGCTGGCCGGATCACGTCAGCCCGTTGCTCGATCGTTGGCTCAGGCATGGGCAGCAATACGGCCAAGTGTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(293-430)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(614-674)

Helicase conserved C-terminal domain (Helicase_C)

(480-586)

RecG wedge domain (RecG_wedge)

(12-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

50.296

97.829

0.492
  recG/mmsA Streptococcus pneumoniae R6

40.68

97.829

0.398
  recG/mmsA Streptococcus pneumoniae R36A

40.68

97.829

0.398
  recG Bacillus subtilis subsp. subtilis str. 168

39.822

97.395

0.388