Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   U9R80_RS19870 Genome accession   NZ_CP141608
Coordinates   4377500..4379722 (-) Length   740 a.a.
NCBI ID   WP_301839479.1    Uniprot ID   -
Organism   Pseudomonas sp. JQ170C     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4372500..4384722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U9R80_RS19835 (U9R80_19835) murB 4372894..4373913 (-) 1020 WP_301839485.1 UDP-N-acetylmuramate dehydrogenase -
  U9R80_RS19840 (U9R80_19840) - 4373910..4374374 (-) 465 WP_301839484.1 low molecular weight protein-tyrosine-phosphatase -
  U9R80_RS19845 (U9R80_19845) kdsB 4374374..4375138 (-) 765 WP_301839483.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  U9R80_RS19850 (U9R80_19850) - 4375135..4375320 (-) 186 WP_011532874.1 Trm112 family protein -
  U9R80_RS19855 (U9R80_19855) lpxK 4375359..4376366 (-) 1008 WP_301839482.1 tetraacyldisaccharide 4'-kinase -
  U9R80_RS19860 (U9R80_19860) - 4376366..4376797 (-) 432 WP_301839481.1 biopolymer transporter ExbD -
  U9R80_RS19865 (U9R80_19865) exbB 4376794..4377429 (-) 636 WP_301839480.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  U9R80_RS19870 (U9R80_19870) comA 4377500..4379722 (-) 2223 WP_301839479.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  U9R80_RS19875 (U9R80_19875) - 4379866..4380408 (+) 543 WP_301839478.1 DUF2062 domain-containing protein -
  U9R80_RS19880 (U9R80_19880) - 4380376..4381155 (-) 780 WP_301839477.1 ABC transporter permease -
  U9R80_RS19885 (U9R80_19885) - 4381152..4382084 (-) 933 WP_301839476.1 ABC transporter ATP-binding protein -
  U9R80_RS19890 (U9R80_19890) - 4382223..4382846 (-) 624 WP_301839475.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 80796.04 Da        Isoelectric Point: 10.5291

>NTDB_id=917687 U9R80_RS19870 WP_301839479.1 4377500..4379722(-) (comA) [Pseudomonas sp. JQ170C]
MRTGMLALALGLLCLRVLPAVPSVGIVAMMALIGLSCLPWRARPLGLFLLGLSWACVSAQQALDDRLAPTLDGRTVWLEG
KVVGLPEQGERIVRFELEEAHSRRADLPRRLHLSWFGGPAVFSGERWRLAVSLKRPHGLLNPHGPDREATLLARRIGATG
SVKAGERLAPAEAAWREGVRQRLLKVDAQGREAELVALVLGDGKGLARENWDVLQATGTVHLLVISGQHIGLLAGLVYGL
VAGLARWGWWPQRLPWLPWACGLAFVAALGYGLLAGFQVPVQRACMMLAMVLLWRLRFRHLGVGLPLLLALVAVLLWEPL
ASLLPGFWLSFAAVAVLTFTFSGRLGAWNRWLVWGRAQWLIALGLLPALLALGLPISITAPLANLLAVPWISLAALPLAL
LGTLLLPVPLLGEPVLWLVGGLLDGLFRLLGALADWRPAWLPEPLPWFLWGLVCTGALLLLLPRAMPMRVLGWPLLLLVV
FAPRERLPLGQVEVWQLDVGQGLAFVLRTQNHAMLYDAGPAMGGQDLGARVVVPTLRRLGVSLLDLMLLSHADADHAGGA
PAVLRGLPVLRVVAGESSRLPAALHAQACESGQRWQWDGVSFSVWQWAGARDSNQDSCVLLVEASGERLLLTGDLDAPGE
RAWARDWQATRVDWLQSPHHGSRSSSSQVLLNTTAPRGVLISRGRYNAFGHPHAEVMERYRTNGIEVFDSAVRGALRLRL
GDFSEPLGMRDQRRFWRDPS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=917687 U9R80_RS19870 WP_301839479.1 4377500..4379722(-) (comA) [Pseudomonas sp. JQ170C]
ATGCGCACAGGGATGTTAGCGCTTGCTCTGGGCCTGTTGTGCCTGAGGGTTCTACCGGCTGTGCCATCGGTCGGAATAGT
GGCCATGATGGCCTTGATCGGGTTGAGTTGCCTGCCTTGGCGGGCTCGTCCACTGGGGCTTTTCCTGCTGGGATTGAGCT
GGGCGTGTGTGTCGGCGCAACAGGCGCTGGATGATCGCCTGGCGCCGACACTCGATGGTCGTACGGTGTGGCTTGAGGGC
AAGGTGGTCGGTTTGCCTGAGCAGGGTGAGCGCATCGTGCGGTTTGAGCTCGAAGAGGCTCACTCCCGGCGCGCCGACCT
GCCACGTCGGCTGCACCTGAGCTGGTTTGGCGGGCCAGCGGTGTTCAGTGGCGAGCGCTGGCGCCTGGCCGTCAGCCTCA
AGCGCCCCCACGGGCTGCTCAACCCCCATGGTCCGGATCGCGAAGCGACCTTGCTGGCTCGACGTATCGGCGCCACTGGC
AGCGTCAAGGCCGGTGAGCGCCTGGCACCCGCTGAAGCAGCTTGGCGCGAAGGTGTGCGCCAGCGCTTGCTCAAGGTCGA
TGCCCAGGGGCGTGAGGCAGAGCTGGTGGCACTCGTGCTGGGAGACGGCAAGGGGCTGGCCCGGGAGAACTGGGATGTGC
TGCAGGCGACTGGCACGGTTCACTTGCTGGTGATTTCCGGGCAGCACATCGGCCTGCTGGCCGGGCTGGTCTATGGACTG
GTCGCAGGGCTGGCCCGATGGGGCTGGTGGCCGCAAAGGCTGCCCTGGTTGCCCTGGGCATGCGGCCTGGCGTTTGTCGC
CGCGCTGGGGTACGGGTTGCTGGCGGGCTTCCAGGTGCCGGTCCAGCGCGCCTGCATGATGCTTGCGATGGTGCTGCTGT
GGCGCTTGCGCTTTCGCCATCTCGGGGTGGGCCTGCCGTTGTTGCTGGCGCTGGTTGCGGTGTTGCTATGGGAACCACTG
GCCAGTTTGCTGCCGGGGTTCTGGTTGTCTTTTGCCGCTGTCGCGGTGCTCACCTTTACCTTCAGTGGCCGTTTGGGGGC
CTGGAACCGGTGGCTGGTCTGGGGGAGGGCGCAGTGGTTGATTGCTCTGGGCCTGTTGCCGGCGTTGTTGGCACTGGGGC
TGCCGATCAGTATCACTGCGCCCTTGGCCAATTTGCTTGCCGTGCCCTGGATCAGCCTGGCGGCACTGCCCCTGGCGCTA
CTGGGGACGCTGCTGTTGCCGGTGCCGTTGTTGGGTGAGCCTGTGCTCTGGTTGGTCGGTGGTCTGCTCGACGGCTTGTT
TCGACTGCTGGGCGCGCTGGCGGATTGGCGCCCGGCGTGGCTGCCAGAACCCTTGCCCTGGTTCCTGTGGGGGCTGGTAT
GTACCGGAGCGCTGTTGCTGCTGTTGCCCCGCGCAATGCCGATGCGGGTGCTGGGCTGGCCATTGTTGTTGCTGGTGGTA
TTTGCGCCCAGGGAGCGGCTGCCCCTTGGCCAGGTGGAGGTCTGGCAGCTGGATGTCGGTCAGGGCCTGGCCTTTGTCCT
GCGTACCCAAAACCACGCGATGCTGTATGACGCAGGGCCGGCGATGGGAGGGCAGGACCTGGGAGCGCGCGTCGTAGTAC
CGACATTGCGCAGGCTGGGTGTGAGCCTGCTTGATCTCATGCTGCTCAGCCACGCCGATGCCGATCATGCCGGCGGTGCC
CCTGCGGTGCTGCGCGGTCTGCCAGTGCTCAGGGTGGTGGCTGGGGAGTCGTCAAGACTGCCGGCTGCATTACACGCCCA
AGCCTGCGAAAGCGGCCAGCGCTGGCAGTGGGATGGGGTAAGTTTTTCGGTCTGGCAGTGGGCTGGCGCCCGTGACAGCA
ATCAGGATTCCTGTGTGCTGTTGGTGGAGGCGAGTGGTGAGCGGTTGCTGCTTACAGGCGACCTGGATGCCCCCGGCGAG
CGAGCCTGGGCAAGAGACTGGCAGGCCACCCGGGTTGACTGGTTGCAGTCTCCGCACCATGGCAGTCGCAGTTCCTCCAG
CCAGGTGTTGTTGAACACTACTGCGCCTCGCGGCGTGTTGATTTCCAGGGGGCGCTACAACGCGTTCGGCCACCCCCACG
CCGAGGTCATGGAACGCTACCGGACCAATGGCATCGAAGTGTTCGACAGCGCCGTGCGCGGTGCATTGCGCCTGCGCCTG
GGTGATTTCAGCGAGCCGTTGGGAATGCGTGATCAGCGGCGTTTCTGGCGTGACCCCAGTTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-658)

Domain of unknown function (DUF4131) (DUF4131)

(24-167)

Competence protein (Competence)

(198-462)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

61.196

97.162

0.595
  comA Ralstonia pseudosolanacearum GMI1000

34.586

100

0.373