Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   U9R80_RS19865 Genome accession   NZ_CP141608
Coordinates   4376794..4377429 (-) Length   211 a.a.
NCBI ID   WP_301839480.1    Uniprot ID   -
Organism   Pseudomonas sp. JQ170C     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4371794..4382429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U9R80_RS19835 (U9R80_19835) murB 4372894..4373913 (-) 1020 WP_301839485.1 UDP-N-acetylmuramate dehydrogenase -
  U9R80_RS19840 (U9R80_19840) - 4373910..4374374 (-) 465 WP_301839484.1 low molecular weight protein-tyrosine-phosphatase -
  U9R80_RS19845 (U9R80_19845) kdsB 4374374..4375138 (-) 765 WP_301839483.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  U9R80_RS19850 (U9R80_19850) - 4375135..4375320 (-) 186 WP_011532874.1 Trm112 family protein -
  U9R80_RS19855 (U9R80_19855) lpxK 4375359..4376366 (-) 1008 WP_301839482.1 tetraacyldisaccharide 4'-kinase -
  U9R80_RS19860 (U9R80_19860) - 4376366..4376797 (-) 432 WP_301839481.1 biopolymer transporter ExbD -
  U9R80_RS19865 (U9R80_19865) exbB 4376794..4377429 (-) 636 WP_301839480.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  U9R80_RS19870 (U9R80_19870) comA 4377500..4379722 (-) 2223 WP_301839479.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  U9R80_RS19875 (U9R80_19875) - 4379866..4380408 (+) 543 WP_301839478.1 DUF2062 domain-containing protein -
  U9R80_RS19880 (U9R80_19880) - 4380376..4381155 (-) 780 WP_301839477.1 ABC transporter permease -
  U9R80_RS19885 (U9R80_19885) - 4381152..4382084 (-) 933 WP_301839476.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22816.02 Da        Isoelectric Point: 6.8759

>NTDB_id=917686 U9R80_RS19865 WP_301839480.1 4376794..4377429(-) (exbB) [Pseudomonas sp. JQ170C]
MWELVKSGGWMMLPIILSSIAAMAIIAERLWALRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGTGMSANASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=917686 U9R80_RS19865 WP_301839480.1 4376794..4377429(-) (exbB) [Pseudomonas sp. JQ170C]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCTGCCATGGCTATCATCGC
CGAGCGTCTCTGGGCCTTGCGTGCCAGCCGGGTTACCCCGCCGCACCTGCTCGGGCAGGTGTGGATGTGGATCAAGGACA
AACAGCTCACCAGTGACAAGCTCAAGGCTCTGCGCGCCGATTCGCCGCTCGGCGAGATCCTCGCTGCGGGCCTGGCCAAC
TCCCGTCATGGTCGAGAGATCATGAAAGAGTGCATCGAGGAAGCCGCAGCCCGGGTTATCCACGAACTGGAGCGCTACAT
CAATGCTCTGGGTACCATTGCCGCGATGGCGCCACTGCTCGGTTTGCTGGGTACCGTGCTGGGCATGATCGACATTTTCA
GCTCGTTCATGGGCACCGGCATGAGCGCCAACGCCTCCGTGCTGGCCGGTGGTATCTCCAAGGCACTGATCACGACGGCA
GCAGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGTTTCCTGCAGCGGCGCATCGATGAACTGGTGGTCGGCAT
GGAGCAGGAGGCCATCAAGTTGGTCGAAGTGGTGCAGGGCGATCGCGATGTCGACCTGGCCGAGGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858