Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   OCV52_RS14330 Genome accession   NZ_AP025465
Coordinates   3091700..3092332 (+) Length   210 a.a.
NCBI ID   WP_004410522.1    Uniprot ID   A0A240EMA6
Organism   Vibrio chagasii strain LMG 21353     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3086700..3097332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV52_RS14310 - 3088450..3088920 (+) 471 WP_137406894.1 TIGR02444 family protein -
  OCV52_RS14315 - 3089190..3090170 (+) 981 WP_102425081.1 hydrolase -
  OCV52_RS14320 - 3090300..3090512 (+) 213 WP_004737179.1 YheU family protein -
  OCV52_RS14325 - 3090590..3091459 (+) 870 WP_004737178.1 phosphoribulokinase -
  OCV52_RS14330 crp 3091700..3092332 (+) 633 WP_004410522.1 cAMP-activated global transcriptional regulator CRP Regulator
  OCV52_RS14335 - 3092522..3093313 (-) 792 WP_102425082.1 DUF1338 domain-containing protein -
  OCV52_RS14340 astD 3093529..3094986 (-) 1458 WP_102425083.1 succinylglutamate-semialdehyde dehydrogenase -
  OCV52_RS14345 astA 3095026..3096045 (-) 1020 WP_061033630.1 arginine N-succinyltransferase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23596.37 Da        Isoelectric Point: 7.4009

>NTDB_id=91750 OCV52_RS14330 WP_004410522.1 3091700..3092332(+) (crp) [Vibrio chagasii strain LMG 21353]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMASRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=91750 OCV52_RS14330 WP_004410522.1 3091700..3092332(+) (crp) [Vibrio chagasii strain LMG 21353]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACATTAGAGTGGTTCCTTTCACACTGTCATATTCATAAGTACCCTTCAAA
AAGTACTTTGATCCATGCTGGTGAAAAGGCAGAGACCTTGTACTACATCGTTAAAGGTTCTGTGGCAGTTCTTATTAAAG
ACGAAGAAGGTAAGGAAATGATTCTTTCTTACCTAAACCAAGGCGACTTCATCGGTGAGCTAGGCTTGTTCGAAGAAGAC
CAAGAGCGTACAGCTTGGGTTCGTGCTAAATCTCCTTGTGAAGTAGCTGAAATTTCTTTCAAGAAGTTCCGTCAACTTAT
CCAAGTGAACCCAGACATCCTAATGCGTCTTTCAGCGCAAATGGCAAGCCGCCTACAAGTAACTAGCCAAAAGGTTGGTG
ACTTAGCGTTCCTTGACGTAACAGGTCGTATCGCTCAAACGCTACTAAACCTAGCGAAACAGCCAGATGCAATGACTCAC
CCTGACGGCATGCAAATCAAGATCACTCGTCAAGAGATTGGCCAAATCGTTGGTTGTTCTCGTGAGACAGTAGGTCGTAT
CTTGAAGATGCTAGAAGAGCAGAACCTAATTTCTGCACACGGTAAGACTATCGTGGTATACGGCACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A240EMA6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment