Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   QZD84_RS14880 Genome accession   NZ_CP141290
Coordinates   3150146..3150739 (-) Length   197 a.a.
NCBI ID   WP_005496571.1    Uniprot ID   A0A0F2HLP7
Organism   Vibrio parahaemolyticus strain BM26A     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3145146..3155739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZD84_RS14860 aroB 3146022..3147122 (-) 1101 WP_005480443.1 3-dehydroquinate synthase -
  QZD84_RS14865 aroK 3147154..3147672 (-) 519 WP_005381319.1 shikimate kinase AroK -
  QZD84_RS14870 pilQ 3147861..3149609 (-) 1749 WP_005488227.1 type IV pilus secretin PilQ family protein Machinery gene
  QZD84_RS14875 pilP 3149641..3150156 (-) 516 WP_005454781.1 pilus assembly protein PilP Machinery gene
  QZD84_RS14880 pilO 3150146..3150739 (-) 594 WP_005496571.1 type 4a pilus biogenesis protein PilO Machinery gene
  QZD84_RS14885 pilN 3150732..3151310 (-) 579 WP_015297396.1 PilN domain-containing protein Machinery gene
  QZD84_RS14890 pilM 3151294..3152310 (-) 1017 WP_005496568.1 type IV pilus assembly protein PilM Machinery gene
  QZD84_RS14895 - 3152453..3155023 (+) 2571 WP_005496567.1 PBP1A family penicillin-binding protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 23019.57 Da        Isoelectric Point: 4.9419

>NTDB_id=916992 QZD84_RS14880 WP_005496571.1 3150146..3150739(-) (pilO) [Vibrio parahaemolyticus strain BM26A]
MVNWQDLEMDEIAEWPLLPQLVVICLLVLLIQGFGYWFYLKPEEARLNNLIQEEQTLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSENFLYRLPLNIELTGDFHDIGRFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVRANTYQFKPEEKKDGK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=916992 QZD84_RS14880 WP_005496571.1 3150146..3150739(-) (pilO) [Vibrio parahaemolyticus strain BM26A]
ATGGTTAATTGGCAAGATCTAGAAATGGATGAGATTGCTGAATGGCCATTACTGCCTCAGCTTGTAGTGATCTGCCTGCT
TGTTCTTCTTATCCAAGGGTTTGGTTATTGGTTTTACTTAAAGCCAGAAGAGGCTCGCTTGAACAATTTGATTCAAGAGG
AGCAAACATTAAAAGTGGCATTGCGCATAAAAGCCAACAAGGTGGCTGCATTGCCTCAGTTGCAATCTCAACTGGACGAG
CTTACTACGCGTTATGAGTTGCTGTTGCAACAACTACCGGCACAAAAAGAGTTGGCCACAATGTTGGCGTCGGTAAACGA
ACTCGGTATCGACAACAAGTTAACGTTTACTCGCATCGATTGGGGAGAAAAGCAATCTGAAAACTTCCTGTATCGATTGC
CACTAAATATCGAGCTAACAGGTGATTTCCACGATATCGGTCGTTTTTCACAGGCCATTGCCACACTGCCACGAATCATC
ACCTTTAAAGACGTGACTTGGCAGCGTGTCAGCCAAGAGAGTGAAACTTTGCACTTCCGAGTGAGAGCAAACACTTATCA
GTTCAAGCCTGAGGAAAAGAAAGATGGGAAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(47-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F2HLP7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Vibrio campbellii strain DS40M4

94.211

96.447

0.909
  pilO Vibrio cholerae strain A1552

73.298

96.954

0.711