Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   QZD84_RS14875 Genome accession   NZ_CP141290
Coordinates   3149641..3150156 (-) Length   171 a.a.
NCBI ID   WP_005454781.1    Uniprot ID   A0A646LMN6
Organism   Vibrio parahaemolyticus strain BM26A     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3144641..3155156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZD84_RS14860 aroB 3146022..3147122 (-) 1101 WP_005480443.1 3-dehydroquinate synthase -
  QZD84_RS14865 aroK 3147154..3147672 (-) 519 WP_005381319.1 shikimate kinase AroK -
  QZD84_RS14870 pilQ 3147861..3149609 (-) 1749 WP_005488227.1 type IV pilus secretin PilQ family protein Machinery gene
  QZD84_RS14875 pilP 3149641..3150156 (-) 516 WP_005454781.1 pilus assembly protein PilP Machinery gene
  QZD84_RS14880 pilO 3150146..3150739 (-) 594 WP_005496571.1 type 4a pilus biogenesis protein PilO Machinery gene
  QZD84_RS14885 pilN 3150732..3151310 (-) 579 WP_015297396.1 PilN domain-containing protein Machinery gene
  QZD84_RS14890 pilM 3151294..3152310 (-) 1017 WP_005496568.1 type IV pilus assembly protein PilM Machinery gene
  QZD84_RS14895 - 3152453..3155023 (+) 2571 WP_005496567.1 PBP1A family penicillin-binding protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18844.96 Da        Isoelectric Point: 10.4351

>NTDB_id=916991 QZD84_RS14875 WP_005454781.1 3149641..3150156(-) (pilP) [Vibrio parahaemolyticus strain BM26A]
MGNKSLLTVLVSALLVGCQANDESLTDFIRGVESQARRDVEKLKPSDKYIAVAYAPEVMRAPFELPKEATIATQPVARKD
CWQPPNRARSGKLEKFPLSQLRLKGVMGMGNTVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVTHSYLLINETLPDGLGC
WQKRKVKLALR

Nucleotide


Download         Length: 516 bp        

>NTDB_id=916991 QZD84_RS14875 WP_005454781.1 3149641..3150156(-) (pilP) [Vibrio parahaemolyticus strain BM26A]
ATGGGAAATAAATCTTTGCTGACGGTGTTGGTAAGCGCTCTATTGGTCGGGTGCCAGGCGAATGATGAATCATTAACGGA
TTTTATTCGTGGTGTTGAGAGCCAGGCTAGGCGAGATGTGGAGAAGCTCAAACCTTCTGACAAATACATCGCAGTGGCGT
ATGCCCCAGAAGTGATGCGTGCTCCTTTCGAATTGCCCAAAGAGGCGACCATCGCGACTCAACCTGTGGCGAGAAAAGAT
TGTTGGCAACCGCCGAACCGAGCGAGATCTGGCAAGTTAGAAAAATTCCCACTCAGCCAACTTCGTTTAAAAGGAGTGAT
GGGGATGGGGAACACCGTTTCTGGTTTAGTTCAAGCCCCGAATGGCACGGTTTACAAAGTGAAACCAGGTCAATACCTCG
GGCGTAATAACGGTAAGGTCACCCATGTTACCCACTCCTATTTGTTGATTAATGAAACCTTGCCCGATGGTTTGGGGTGC
TGGCAAAAACGTAAAGTTAAGTTGGCTTTGAGATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A646LMN6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio campbellii strain DS40M4

83.041

100

0.83
  pilP Vibrio cholerae strain A1552

58.14

100

0.585