Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   U4959_RS09400 Genome accession   NZ_CP141284
Coordinates   1988579..1989286 (+) Length   235 a.a.
NCBI ID   WP_004915082.1    Uniprot ID   A0A8I0S549
Organism   Acinetobacter junii strain H1     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1983579..1994286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U4959_RS09380 (U4959_09380) - 1983729..1984151 (-) 423 WP_005402769.1 hypothetical protein -
  U4959_RS09385 (U4959_09385) clpB 1984316..1986895 (-) 2580 WP_004915091.1 ATP-dependent chaperone ClpB -
  U4959_RS09390 (U4959_09390) - 1987157..1987957 (+) 801 WP_039908393.1 peptidoglycan DD-metalloendopeptidase family protein -
  U4959_RS09395 (U4959_09395) - 1988003..1988431 (-) 429 WP_004953612.1 OsmC family protein -
  U4959_RS09400 (U4959_09400) crp 1988579..1989286 (+) 708 WP_004915082.1 cAMP-activated global transcriptional regulator CRP Regulator
  U4959_RS09405 (U4959_09405) - 1989490..1990269 (+) 780 WP_004915079.1 M48 family metallopeptidase -
  U4959_RS09410 (U4959_09410) - 1990322..1992055 (-) 1734 WP_324272800.1 acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha -
  U4959_RS09415 (U4959_09415) - 1992056..1993630 (-) 1575 WP_005402772.1 urea amidolyase family protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26613.24 Da        Isoelectric Point: 4.7528

>NTDB_id=916885 U4959_RS09400 WP_004915082.1 1988579..1989286(+) (crp) [Acinetobacter junii strain H1]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEKNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDTSLEENAFTEEEFDDEE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=916885 U4959_RS09400 WP_004915082.1 1988579..1989286(+) (crp) [Acinetobacter junii strain H1]
ATGACTTCAAATTTTTCACAGCTTAGCACTGATGCTTTATCACCAGGTCAATTACCTGAATCTGTTAAAGCCTTGCTAAA
ACGTGCTCATATTAACAGATACCCTAAACGCACCACGATTGTTGACGCTGGAACGGAATCAAAATCACTGTATTTAATAT
TAAAAGGTTCGGTGTCAATTATTTTACGTGAAGATGATGAACGTGAGATTGTCGTTGCATACTTAAACCCTGGGGATTTC
TTTGGCGAAATGGGTCTTTTTGAGAAGAACCCACAACGTACTGCGGAAGTAAGAACTCGTGATGTTTGTGAAATCGCCGA
GATTTCATATGACAACTTCCACGAATTAAGCAAACAATATCCTGATTTGAGCTACGCGGTATTTGCTCAATTAGTTCGCC
GCTTAAAAAATACAACACGTAAAGTAACTGACCTTGCATTTATTGATGTATCTGGTCGTATTGCACGTTGTTTAATTGAT
TTATCTTCGCAACCAGAAGCAATGATCTTACCAAATGGTCGTCAAATCCGTATTACTCGCCAAGAGATTGGTCGTATTGT
CGGTTGTTCACGTGAAATGGTTGGACGTGTTCTTAAGACGCTTGAAGATCAAGGCATGATTCAAACTGATGGTAAAGCAA
TTTTAATTTTTGATACTTCATTAGAAGAAAATGCATTTACTGAAGAAGAGTTTGACGACGAAGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

96.17

100

0.962
  crp Vibrio cholerae strain A1552

47.826

88.085

0.421
  crp Haemophilus influenzae Rd KW20

49.223

82.128

0.404