Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   U4959_RS01325 Genome accession   NZ_CP141284
Coordinates   288417..289847 (-) Length   476 a.a.
NCBI ID   WP_004917021.1    Uniprot ID   -
Organism   Acinetobacter junii strain H1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 283417..294847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U4959_RS01310 (U4959_01310) lptG 284459..285529 (+) 1071 WP_042892597.1 LPS export ABC transporter permease LptG -
  U4959_RS01315 (U4959_01315) gpmI 285649..287193 (+) 1545 WP_151707867.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  U4959_RS01320 (U4959_01320) - 287203..288378 (+) 1176 WP_151707866.1 S41 family peptidase -
  U4959_RS01325 (U4959_01325) pilR 288417..289847 (-) 1431 WP_004917021.1 sigma-54-dependent transcriptional regulator Regulator
  U4959_RS01330 (U4959_01330) pilS 289870..291435 (-) 1566 WP_042892599.1 sensor histidine kinase Regulator
  U4959_RS01335 (U4959_01335) - 291451..292086 (-) 636 WP_004957336.1 response regulator -
  U4959_RS01340 (U4959_01340) pbpG 292298..293359 (+) 1062 WP_125297253.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  U4959_RS01345 (U4959_01345) - 293523..294137 (+) 615 WP_004957343.1 DUF6915 family protein -

Sequence

Protein


Download         Length: 476 a.a.        Molecular weight: 53458.42 Da        Isoelectric Point: 6.1504

>NTDB_id=916870 U4959_RS01325 WP_004917021.1 288417..289847(-) (pilR) [Acinetobacter junii strain H1]
MATKQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKKFFTEFQYDACLTDLNLPDGNGLDLVKHVTQNYPNTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQTHLDQLIQKALNRPQPEQEAVETALENKLLIGRSAPIQQLRIALKKIARS
QAPVFITGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLNMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLELLVQQGRFRQDLFFRIHVMDIVLPPLRERGQDILI
LANHFIQKISQEWELPVKSLTTRAEQFLLQQYFPGNVRELRNIIERAITLSDDETIDLAHLQTAPLRSSISIPSNAYVQS
DESEITLQSASPNPSSKKLPPEGLERYLENIEKEVLLNALNLTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTEDDE

Nucleotide


Download         Length: 1431 bp        

>NTDB_id=916870 U4959_RS01325 WP_004917021.1 288417..289847(-) (pilR) [Acinetobacter junii strain H1]
ATGGCAACTAAACAACCTCTCGTCTTACTCGTAGACGATGAAGAAGACTTATGTCTTCTTATGCAAATGACGCTCGCACG
TATGGGAATCAAAACTCATCTTGCATATCGTGTGGAGCAAGCCAAAAAATTCTTTACCGAGTTTCAGTACGATGCATGTC
TAACCGATCTTAACCTTCCAGATGGAAATGGTCTTGATCTTGTCAAACATGTGACTCAAAACTATCCAAACACACCCATC
GCTGTTCTTACTGCTTACGGAAATATGGACATTGCAATTGCAGCACTGAAAGCTGGGGCGTTTGACTTTGTTAGCAAACC
AGTGAATCAGACACATCTTGATCAACTGATTCAAAAAGCTTTAAACCGCCCTCAACCCGAACAAGAGGCGGTAGAAACAG
CCTTAGAAAACAAATTGCTGATTGGGCGTTCAGCACCTATTCAACAATTACGGATCGCTTTAAAAAAGATTGCCCGTTCA
CAAGCACCTGTTTTTATTACAGGTGAATCAGGAACAGGAAAAGAAGTTGTTGCGAACTTAGTTCATCGTTTAAGTAATCG
CAGCGAAGGACCTTTCATTGCCATCAACTGTGGTGCTATTCCAACAGAATTAATGGAAAGCGAATTATTCGGTCATAAGA
AAGGCAGCTTTACAGGTGCAACACAAGATAAACAAGGACTTATCTTATCTGCACACGGTGGCAGCCTTTTTTTAGATGAA
ATTGCAGAACTTCCCTTAAATATGCAAGTAAAACTTTTACGTGCAGTACAAGAGAAAAAAATTCGTCCAGTTGGATCAGA
TCAAGAAATTGATGTGGATTTCCGTGTGATTAGTGCCAGCCACCAAGATTTAGAACTCTTGGTTCAGCAAGGTCGCTTTA
GACAAGATTTATTCTTCCGCATTCATGTGATGGATATCGTATTGCCTCCACTTCGTGAACGTGGTCAAGATATCTTAATA
CTGGCAAATCATTTTATTCAAAAGATTAGCCAAGAATGGGAGTTACCTGTTAAATCCCTCACCACACGTGCAGAGCAATT
CCTCTTGCAGCAATATTTTCCAGGTAACGTTCGCGAACTTCGAAACATTATTGAACGAGCAATCACTCTCAGTGATGATG
AAACCATTGATTTGGCTCATTTGCAAACTGCACCTCTGCGTAGCTCAATCAGTATTCCTTCAAATGCTTATGTTCAGTCA
GATGAAAGTGAAATAACGCTGCAAAGTGCGAGTCCAAACCCAAGCTCTAAAAAATTACCGCCAGAAGGTTTGGAACGCTA
TTTAGAAAATATTGAAAAAGAAGTGTTATTGAATGCTTTAAATCTGACCCACTGGAATCGAACGCTAGCAGCAAAAAAAC
TTGGAATGACCTTCCGATCTTTACGCTATCGTTTGAAAAAGTTTGGTTTAGATACTGAGGATGATGAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(428-468)

Response regulator receiver domain (Response_reg)

(8-117)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

84.034

100

0.84
  pilR Pseudomonas aeruginosa PAK

50.216

97.479

0.49