Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   U4959_RS01330 Genome accession   NZ_CP141284
Coordinates   289870..291435 (-) Length   521 a.a.
NCBI ID   WP_042892599.1    Uniprot ID   -
Organism   Acinetobacter junii strain H1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 284870..296435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U4959_RS01315 (U4959_01315) gpmI 285649..287193 (+) 1545 WP_151707867.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  U4959_RS01320 (U4959_01320) - 287203..288378 (+) 1176 WP_151707866.1 S41 family peptidase -
  U4959_RS01325 (U4959_01325) pilR 288417..289847 (-) 1431 WP_004917021.1 sigma-54-dependent transcriptional regulator Regulator
  U4959_RS01330 (U4959_01330) pilS 289870..291435 (-) 1566 WP_042892599.1 sensor histidine kinase Regulator
  U4959_RS01335 (U4959_01335) - 291451..292086 (-) 636 WP_004957336.1 response regulator -
  U4959_RS01340 (U4959_01340) pbpG 292298..293359 (+) 1062 WP_125297253.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  U4959_RS01345 (U4959_01345) - 293523..294137 (+) 615 WP_004957343.1 DUF6915 family protein -
  U4959_RS01350 (U4959_01350) - 294161..294940 (+) 780 WP_125297252.1 hypothetical protein -
  U4959_RS01355 (U4959_01355) thrC 295007..296146 (-) 1140 WP_002048893.1 threonine synthase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 59226.17 Da        Isoelectric Point: 6.5633

>NTDB_id=916871 U4959_RS01330 WP_042892599.1 289870..291435(-) (pilS) [Acinetobacter junii strain H1]
MLGKIASSVSQTVYKLGIWYSGYRLIISISLLLIYLLTAEQLASDYDYPFLYFYTLICFIAFSIFQLFLLKILPVQVTKQ
LILIFLIDVICLALITFSAGGPNLQLSLLYVIVIFSSAILLNSQLSLIVTLFAVIMVVYQRFIGDFFNYNNLNHLSNSIF
LAFLFFVVHAIGRIAVQRFKILETLTFHQSIEIHQLQNINRYILEQIEDGYLVLDESNHIVLSNPAANTLLGINVPVSTE
KTPLIKWQPDLFELIKFSELKDGEEFSFESQLSPYTVNVRVKHLIVPEQSLFLLILKDAQKLTQQVQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELLKGSDIHQQDMLSRMISKQAKRIDSIIQDTLGMARNKPTEPQIIQLTEFFETLLNEDLADVK
SKIQLSLPENVAILFDEKQLRQVLINLIRNAIRHNAPEAEYIEVNIHLNDGRTRIDVIDFGTGVAKRDISQLFKPFFSTE
IKGTGLGLYLSHSFCEANHAKLNYIEQQQGACFRIECSKIH

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=916871 U4959_RS01330 WP_042892599.1 289870..291435(-) (pilS) [Acinetobacter junii strain H1]
ATGCTGGGCAAAATAGCCTCTTCCGTCTCCCAAACCGTCTATAAGCTTGGTATTTGGTATAGTGGATATCGGCTGATTAT
CTCTATCAGCCTTTTGCTCATTTATTTATTAACGGCTGAGCAATTAGCCTCAGACTATGATTACCCTTTTTTATATTTCT
ATACACTGATTTGCTTTATTGCATTTAGTATTTTCCAGCTTTTTTTACTCAAAATACTTCCAGTACAAGTCACTAAACAG
CTCATTTTAATTTTTCTTATTGATGTGATTTGTTTAGCGTTGATTACTTTCTCTGCGGGGGGGCCAAACTTACAATTAAG
TTTGCTGTACGTAATCGTAATCTTTTCTTCTGCAATTCTACTAAACTCTCAGCTCTCGCTGATCGTGACACTTTTTGCTG
TCATTATGGTGGTTTATCAACGTTTTATTGGCGATTTCTTTAACTACAATAACTTAAATCATTTAAGTAATAGTATCTTT
CTCGCTTTTTTATTCTTTGTTGTGCATGCGATTGGACGTATTGCAGTACAACGTTTTAAAATTTTAGAGACGTTGACATT
CCATCAATCCATAGAGATTCATCAACTTCAAAATATCAACCGCTACATCCTTGAACAGATTGAAGATGGTTATCTCGTTC
TAGATGAAAGTAACCATATTGTTTTAAGTAATCCTGCTGCCAATACTTTACTTGGAATTAATGTACCTGTTTCTACTGAG
AAAACACCTTTAATAAAATGGCAACCCGATCTTTTTGAGCTGATCAAATTTAGTGAGCTAAAAGATGGTGAGGAATTTAG
TTTTGAATCACAACTTAGCCCATACACGGTCAATGTTCGAGTCAAACATTTAATTGTTCCTGAACAGTCCCTATTCTTAT
TGATCCTGAAAGATGCCCAAAAACTTACTCAACAGGTTCAACAATTGAAATTGGCAGCTTTAGGACAACTTTCTGCAAGT
ATTGCACACGAAATCAGAAACCCACTTGCAGCTATTGTACAAGCCAATGAATTACTTAAGGGTAGCGATATCCATCAGCA
AGACATGCTATCTCGAATGATTAGCAAACAGGCAAAAAGGATCGATAGCATCATTCAAGATACTTTGGGGATGGCACGCA
ATAAACCTACTGAACCACAAATTATTCAATTAACAGAATTTTTTGAAACATTATTAAATGAAGATTTAGCAGATGTTAAA
TCTAAGATCCAACTCAGTTTGCCTGAAAATGTAGCAATCCTGTTTGATGAAAAACAATTAAGACAAGTGTTAATCAATCT
TATTCGTAATGCTATAAGACACAATGCACCTGAAGCAGAATATATTGAAGTGAATATTCATCTAAATGATGGTCGCACCC
GAATAGATGTGATTGATTTTGGTACAGGCGTTGCAAAAAGAGATATTTCTCAGTTATTCAAACCATTTTTTAGTACCGAA
ATTAAAGGAACTGGTTTAGGATTGTACTTGTCTCATAGTTTTTGTGAGGCAAATCATGCAAAGCTCAATTATATAGAGCA
ACAACAAGGAGCATGTTTCAGGATTGAATGCTCAAAAATTCATTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(313-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-516)

PAS fold (PAS)

(203-298)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

65.504

99.04

0.649